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1.
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10 p, 1.5 MB |
Prediction of protein subplastid localization and origin with PlastoGram
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Sidorczuk, Katarzyna (University of Wrocław) ;
Gagat, Przemysław (University of Wrocław) ;
Kała, Jakub (Warsaw University of Technology) ;
Nielsen, Henrik (Technical University of Denmark. Department of Health Technology) ;
Pietluch, Filip (University of Wrocław) ;
Mackiewicz, Paweł (University of Wrocław) ;
Burdukiewicz, Michał (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Due to their complex history, plastids possess proteins encoded in the nuclear and plastid genome. Moreover, these proteins localize to various subplastid compartments. Since protein localization is associated with its function, prediction of subplastid localization is one of the most important steps in plastid protein annotation, providing insight into their potential function. [...]
2023 -  10.1038/s41598-023-35296-0
Scientific reports, Vol. 13 (May 2023) , art. 8365
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2.
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13 p, 3.4 MB |
TEMPRANILLO homologs in apple regulate flowering time in the woodland strawberry Fragaria vesca
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Dejahang, Ata (National Institute of Genetic Engineering and Biotechnology. Department of Plant Biotechnology (Iran)) ;
Maghsoudi, Naeimeh (University of Tabriz. Department of Horticultural Sciences) ;
Mousavi, Amir (National Institute of Genetic Engineering and Biotechnology. Department of Plant Biotechnology (Iran)) ;
Farsad-Akhtar, Nader (University of Tabriz. Department of Plant Biology) ;
Matias-Hernandez, Luis (Centre de Recerca en Agrigenòmica) ;
Pelaz, Soraya (Centre de Recerca en Agrigenòmica) ;
Folta, Kevin (University of Florida. Horticultural Sciences Department) ;
Mahna, Nasser (Centre de Recerca en Agrigenòmica)
The long juvenile period of fruit trees makes their breeding costly and time-consuming. Therefore, flowering time engineering and shortening the juvenile phase have become a breeding priority for the genetic improvement of fruit tree crops. [...]
2023 - 10.1038/s41598-023-29059-0
Scientific reports, Vol. 13 (February 2023) , art. 1968
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3.
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16 p, 3.6 MB |
Polarimetric observables for the enhanced visualization of plant diseases
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Rodríguez, Carla (Universitat Autònoma de Barcelona. Departament de Física) ;
Garcia-Caurel, Enrique (Institut Polytechnique de Paris) ;
Garnatje, Teresa (Institut Botànic de Barcelona) ;
Serra i Ribas, Mireia (Universitat Autònoma de Barcelona. Departament de Física) ;
Luque, Jordi (Institut de Recerca i Tecnologia Agroalimentàries) ;
Campos Coloma, Juan (Universitat Autònoma de Barcelona. Departament de Física) ;
Lizana Tutusaus, Ángel (Universitat Autònoma de Barcelona. Departament de Física)
This paper highlights the potential of using polarimetric methods for the inspection of plant diseased tissues. We show how depolarizing observables are a suitable tool for the accurate discrimination between healthy and diseased tissues due to the pathogen infection of plant samples. [...]
2022 - 10.1038/s41598-022-19088-6
Scientific reports, Vol. 12 (August 2022) , art. 14743
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4.
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10 p, 2.7 MB |
Neural networks for increased accuracy of allergenic pollen monitoring
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Polling, Marcel (Naturalis Biodiversity Center) ;
Li, Chen (Leiden Institute of Advanced Computer Science) ;
Cao, Lu (Leiden Institute of Advanced Computer Science) ;
Verbeek, Fons (Leiden Institute of Advanced Computer Science) ;
de Weger, Letty A.. (Leiden University Medical Center. Department of Pulmonology) ;
Belmonte, Jordina (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ;
De Linares Fernández, Concepción (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ;
Willemse, Joost (Institute of Biology. Microbial Sciences) ;
de Boer, Hugo (University of Oslo. Natural History Museum) ;
Gravendeel, Barbara (Naturalis Biodiversity Center)
Monitoring of airborne pollen concentrations provides an important source of information for the globally increasing number of hay fever patients. Airborne pollen is traditionally counted under the microscope, but with the latest developments in image recognition methods, automating this process has become feasible. [...]
2021 - 10.1038/s41598-021-90433-x
Scientific reports, Vol. 11 (May 2021) , art. 11357
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5.
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16 p, 2.6 MB |
Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree
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Sebastiana, M. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Gargallo-Garriga, Albert (Czech Academy of Sciences. Global Change Research Institute) ;
Sardans i Galobart, Jordi (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Pérez-Trujillo, Míriam (Universitat Autònoma de Barcelona. Servei de Ressonància Magnètica Nuclear) ;
Monteiro, F. (Universidade de Lisboa. Instituto Superior de Agronomia) ;
Figueiredo, Andreia (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Maia, M. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Nascimento, R. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Silva, M. Sousa (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Ferreira, A. N. (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Cordeiro, C. (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Marques, A. P. (Universidade de Lisboa. Departamento de Química e Bioquímica) ;
Sousa, L. (Universidade de Lisboa. Centro de Estatística e Aplicações) ;
Malhó, R. (Universidade de Lisboa. Instituto de Biosistemas e Ciências Integrativas) ;
Peñuelas, Josep (Centre de Recerca Ecològica i d'Aplicacions Forestals)
Mycorrhizas are known to have a positive impact on plant growth and ability to resist major biotic and abiotic stresses. However, the metabolic alterations underlying mycorrhizal symbiosis are still understudied. [...]
2021 - 10.1038/s41598-021-87886-5
Scientific reports, Vol. 11 (April 2021) , art. 8576
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6.
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1 p, 835.9 KB |
Author Correction : The future of Blue Carbon science
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Macreadie, Peter I. (Deakin University. Center for Integrative Ecology) ;
Anton, Andrea (King Abdullah University of Science and Technology. Red Sea Research Center and Computational Bioscience Research Center) ;
Raven, John A. (University of Western Australia) ;
Beaumont, Nicola (Plymouth Marine Laboratory. Prospect Place) ;
Connolly, Rod M. (Griffith University. Australian Rivers Institute-Coast & Estuaries) ;
Friess, Daniel A. (National University of Singapore. Department of Geography) ;
Kelleway, Jeffrey J. (University of Wollongong) ;
Kennedy, Hilary (Bangor University) ;
Kuwae, Tomohiro (Port and Airport Research Institute) ;
Lavery, Paul S. (Edith Cowan University. Centre for Marine Ecosystems Research) ;
Lovelock, Catherine E. (The University of Queensland) ;
Smale, Dan A. (Marine Biological Association of the United Kingdom) ;
Apostolaki, Eugenia T. (Institute of Oceanography. Hellenic Centre for Marine Research) ;
Atwood, Trisha B. (Utah State University. Department of Watershed Sciences and Ecology Center) ;
Baldock, Jeff (CSIRO Agriculture and Food) ;
Bianchi, Thomas S. (University of Florida. Department of Geological Sciences) ;
Chmura, Gail L. (McGill University. Department of Geography) ;
Eyre, Bradley D. (Southern Cross University. Centre for Coastal Biogeochemistry) ;
Fourqurean, James (Florida International University. Department of Biological Sciences and Center for Coastal Oceans Research.) ;
Hall-Spencer, Jason M. (University of Tsukuba. Shimoda Marine Research Center) ;
Huxham, Mark M. (Edinburgh Napier University) ;
Hendriks, Iris E. (Institut Mediterrani d'Estudis Avançats) ;
Krause-Jensen, Dorte (Aarhus University. Arctic Research Centre) ;
Laffoley, Dan (International Union for Conservation of Nature. World Commission on Protected Areas) ;
Luisetti, Tiziana (Centre for Environment, Fisheries and Aquaculture Science) ;
Marbà, Núria (Institut Mediterrani d'Estudis Avançats) ;
Masqué Barri, Pere (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ;
McGlathery, Karen J. (University of Virginia. Department of Environmental Sciences) ;
Megonigal, J. Patrick (Smithsonian Environmental Research Center) ;
Murdiyarso, Daniel (Department of Geophysics and Meteorology. Bogor Agricultural University) ;
Russell, Bayden D. (University of Hong Kong. Swire Institute of Marine Science) ;
Santos, Rui (University of Algarve. Center of Marine Sciences) ;
Serrano, Oscar (Edith Cowan University. Centre for Marine Ecosystems Research) ;
Silliman, Brian R. (Duke University. Nicholas School of the Environment) ;
Watanabe, Kenta (Port and Airport Research Institute) ;
Duarte, Carlos M.. (King Abdullah University of Science and Technology.)
2019 - 10.1038/s41467-019-13126-0
Nature communications, Vol. 10 (November 2019) , art. 5145
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7.
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11 p, 2.4 MB |
Increasing atmospheric CO2 concentrations correlate with declining nutritional status of European forests
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Peñuelas, Josep (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Fernández-Martínez, Marcos (Universiteit Antwerpen. Departement Biologie) ;
Vallicrosa Pou, Helena (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Maspons, Joan (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Zuccarini, Paolo (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Carnicer i Cols, Jofre (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Sanders, Tanja G. M. (Thünen Institute of Forest Ecosystems) ;
Krüger, Inken (Thünen Institute of Forest Ecosystems) ;
Obersteiner, Michael (International Institute for Applied Systems Analysis (Àustria)) ;
Janssens, Ivan (University of Antwerp. Department of Biology) ;
Ciais, Philippe (Laboratoire des Sciences du Climat et de l'Environnement) ;
Sardans i Galobart, Jordi (Centre de Recerca Ecològica i d'Aplicacions Forestals)
The drivers of global change, including increases in atmospheric CO2 concentrations, N and S deposition, and climate change, likely affect the nutritional status of forests. Here we show forest foliar concentrations of N, P, K, S and Mg decreased significantly in Europe by 5%, 11%, 8%, 6% and 7%, respectively during the last three decades. [...]
2020 - 10.1038/s42003-020-0839-y
Communications Biology, Vol. 3 (March 2020) , art. 125
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8.
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30 p, 4.4 MB |
A mobile ELF4 delivers circadian temperature information from shoots to roots
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Chen, Wei Wei (Centre de Recerca en Agrigenòmica) ;
Takahashi, Nozomu (Centre de Recerca en Agrigenòmica) ;
Hirata, Yoshito (The University of Tokyo. Mathematics and Informatics Center) ;
Ronald, James (University of York. Department of Biology) ;
Porco, Silvana (University of Southern California. Keck School of Medicine) ;
Davis, Seth J. (University of York. Department of Biology) ;
Nusinow, Dmitri A. (Donald Danforth Plant Science Center) ;
Kay, Steve A. (University of Southern California. Keck School of Medicine) ;
Mas, Paloma (Centre de Recerca en Agrigenòmica)
The circadian clock is synchronized by environmental cues, mostly by light and temperature. Explaining how the plant circadian clock responds to temperature oscillations is crucial to understanding plant responsiveness to the environment. [...]
2020 - 10.1038/s41477-020-0634-2
Nature plants, Vol. 6, issue 4 (April 2020) , p. 416-426
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9.
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35 p, 12.9 MB |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits
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Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Zhang, Zhonghua (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Fu, Qiushi (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Ma, Shuangwu (Zhengzhou Fruit Research Institute) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Monforte, Antonio J. (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Wang, Pingyong (Zhengzhou Fruit Research Institute) ;
Julca, Irene (Centre de Recerca en Agrigenòmica) ;
Wang, Huaisong (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Liu, Junpu (Zhengzhou Fruit Research Institute) ;
Xu, Yong (Beijing Key Laboratory of Vegetable Germplasm Improvement) ;
Wang, Runze (Nanjing Agricultural University) ;
Ji, Jiabing (Agricultural Genomics Institute at Shenzhen) ;
Xu, Zhihong (Zhengzhou Fruit Research Institute) ;
Kong, Weihu (Zhengzhou Fruit Research Institute) ;
Zhong, Yang (Agricultural Genomics Institute at Shenzhen) ;
Shang, Jianli (Zhengzhou Fruit Research Institute) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Zhang, Jian (Zhengzhou Fruit Research Institute) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pujol Abajo, Marta (Centre de Recerca en Agrigenòmica) ;
Oren, Elad (NeweYa'ar Research Center) ;
Ou, Diandian (Zhengzhou Fruit Research Institute) ;
Wang, Jiming (Zhengzhou Fruit Research Institute) ;
Sun, Dexi (Zhengzhou Fruit Research Institute) ;
Zhao, Shengjie (Zhengzhou Fruit Research Institute) ;
Zhu, Yingchun (Zhengzhou Fruit Research Institute) ;
Li, Na (Zhengzhou Fruit Research Institute) ;
Katzir, Nurit (NeweYa'ar Research Center) ;
Gur, Amit (NeweYa'ar Research Center) ;
Dogimont, Catherine (Institut National de la Recherche Agronomique (França)) ;
Schaefer, Hanno (Technical University of Munich. Department of Ecology and Ecosystem Management) ;
Fan, Wei (Agricultural Genomics Institute at Shenzhen) ;
Bendahmane, Abdelhafid (Institut National de la Recherche Agronomique (França)) ;
Fei, Zhangjun (Cornell University. Boyce Thompson Institute for Plant Research) ;
Pitrat, Michel (Institut National de la Recherche Agronomique (França)) ;
Gabaldón, Toni (Centre de Regulació Genòmica) ;
Lin, Tao (Agricultural Genomics Institute at Shenzhen) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen)
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. [...]
2019 - 10.1038/s41588-019-0522-8
Nature genetics, Vol. 51, issue 11 (Nov. 2019) , p. 1607-1615
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10.
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11 p, 846.5 KB |
Nutrient-cycling mechanisms other than the direct absorption from soil may control forest structure and dynamics in poor Amazonian soils
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Grau Fernández, Oriol (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Peñuelas, Josep (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Ferry, Bruno (AgroParisTech) ;
Freycon, Vicent (Centre de coopération internationale en recherche agronomique pour le développement) ;
Blanc, Lilian (Centre de coopération internationale en recherche agronomique pour le développement) ;
Desprez, Mathilde (Centre de coopération internationale en recherche agronomique pour le développement) ;
Baraloto, Christopher (Florida International University. International Center for Tropical Botany) ;
Chave, Jerome (Centre national de la recherche scientifique. Laboratoire Evolution et Diversité Biologique) ;
Descroix, Laurent (Office National des Fôrests Guyane. Réserve de Montabo) ;
Dourdain, Aurélie (Centre de coopération internationale en recherche agronomique pour le développement) ;
Guitet, Stéphane (Université de Montpellier. Botanique et Modélisation de l'Architecture des Plantes et des Végétations) ;
Janssens, Ivan (University of Antwerp (Bèlgica)) ;
Sardans i Galobart, Jordi (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Hérault, Bruno (Centre de coopération internationale en recherche agronomique pour le développement)
Tropical forests store large amounts of biomass despite they generally grow in nutrient-poor soils, suggesting that the role of soil characteristics in the structure and dynamics of tropical forests is complex. [...]
2017 - 10.1038/srep45017
Scientific reports, Vol. 7, art. 45017 (2017)
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