97b95d9d6b3f2c20b9ed5c454338f4b5 NatCom_a2016v7p12412iENG.pdf b9a2e0f71bc9ed3fbc55fa31399ecd67225c3094 NatCom_a2016v7p12412iENG.pdf 4f76efa391a135b60add52fcaef37555982fffbcb1b794fbc1315c9acbd87aee NatCom_a2016v7p12412iENG.pdf Title: Identification of Siglec-1 null individuals infected with HIV-1 Subject: Nature Communications 7, (2016). doi:10.1038/ncomms12412 Author: Paul J. McLaren Creator: Arbortext Advanced Print Publisher 9.0.226/W Producer: Acrobat Distiller 8.1.0 (Windows) CreationDate: Tue Aug 2 07:01:05 2016 ModDate: Fri Aug 5 11:21:49 2016 Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 7 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 632296 bytes Optimized: yes PDF version: 1.6 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- DJDLDD+AdvOTea1a7398 Type 1C Custom yes yes yes 309 0 DJDLDE+AdvOT9bd21c25.I Type 1C Custom yes yes yes 310 0 DJDLDF+AdvEls-ent7 Type 1C WinAnsi yes yes no 311 0 DJDLDG+AdvOTcb88df00 Type 1C Custom yes yes yes 324 0 DJDLKE+Arial-BoldMT Type 1C WinAnsi yes yes no 325 0 DJDLPD+AdvOTf23bb480 Type 1C Custom yes yes yes 326 0 DJDLPE+AdvTimes-i Type 1C Custom yes yes yes 327 0 DJDMIC+AdvTTda6f6cb8.B Type 1C Custom yes yes yes 337 0 DJDNGB+AdvP4C4E74 Type 1C Custom yes yes yes 159 0 DJDNGC+AdvPi1 Type 1C WinAnsi yes yes no 160 0 DJDNGD+AdvOTb65e897d.B Type 1C Custom yes yes yes 158 0 DJDNHD+AdvEls-ent4 Type 1C WinAnsi yes yes no 142 0 DJDNHE+AdvOT45bf69de.BI Type 1C Custom yes yes yes 143 0 DJDNEO+AdvOT125c650c Type 1C Custom yes yes yes 156 0 DJDNEP+AdvOT1ef757c0 Type 1C Custom yes yes yes 148 0 DJDNGA+AdvOT7d6df7ab.I Type 1C Custom yes yes yes 162 0 DJEMFK+Helvetica Type 1C Custom yes yes no 172 0 DJEMHK+Helvetica-Oblique Type 1C WinAnsi yes yes no 173 0 DJEPBL+AdvOTe75a9404.I Type 1C Custom yes yes yes 181 0 DJEPMI+Symbol Type 1C Custom yes yes yes 184 0 DJEPNI+Helvetica-Bold Type 1C WinAnsi yes yes no 185 0 DJFFEI+Advsymbol Type 1C Custom yes yes no 200 0 DJFGAF+AdvEls-ent3 Type 1C WinAnsi yes yes no 201 0 Jhove (Rel. 1.6, 2011-01-04) Date: 2017-10-29 20:12:44 CET RepresentationInformation: NatCom_a2016v7p12412iENG.pdf ReportingModule: PDF-hul, Rel. 1.8 (2009-05-22) LastModified: 2017-05-19 19:21:24 CEST Size: 632296 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf Profile: Linearized PDF PDFMetadata: Objects: 365 FreeObjects: 1 IncrementalUpdates: 1 DocumentCatalog: PageLayout: SinglePage PageMode: UseNone Outlines: Item: Title: title_link Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@55ad5432 Children: Item: Title: Results Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6672ca8f Children: Item: Title: Genetic description of SIGLEC1 variants Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7a50a6d4 Item: Title: Functional analysis of SIGLEC1 null variant Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@44f8e708 Item: Title: SIGLEC1 null variant in HIV-1 acquisition Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@3107e198 Item: Title: SIGLEC1 null variant in HIV-1 progression Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7c6bdb4d Item: Title: Figure™1Location and frequency of SIGLEC1 protein truncating variants.Protein domains are represented in different colours. Data from the Exome Aggregation Consortium (exac.broadinstitute.org) identifies 70 protein truncating variants in SIGLEC1 including Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@d0adc0c Item: Title: Table 1 Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@43f49e84 Item: Title: Discussion Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@70d30ef6 Item: Title: Figure™2Siglec-1 expression and trans-infection across distinct SIGLEC1 genotypes.Monocytes were isolated and cultured 24thinsph in the presence of 1,000 Uthinspml-1 of IFNagr to induce Siglec-1 expression. (a) Quantification of Siglec-1 expression levels Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@307b7258 Item: Title: Figure™3Analysis of association between Siglec-1 Glu88Ter and HIV-1 clinical outcomes in the absence of antiretroviral treatment.(a) Set point viral load of individuals from the SHCS with or without the Glu88Ter allele (n=2,243). (b) CD4+ T- cell count dy Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@78900845 Item: Title: Methods Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@380f27d9 Children: Item: Title: Patients Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6b01344f Item: Title: Ethics statement Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@1c11656b Item: Title: Primary cell culture Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@3a196232 Item: Title: Siglec-1 surface expression analysis by FACS Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@587dde6a Item: Title: VLP capture and HIV-1 trans-infection assays Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2f952e89 Item: Title: Genetic analyses Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6b223cc6 Item: Title: Statistical analysis Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@14c4221d Item: Title: Data availability Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@589ba891 Item: Title: CameronP. U.Dendritic cells exposed to human immunodeficiency virus type-1 transmit a vigorous cytopathic infection to CD4+ T cellsScience2573833871992GeijtenbeekT. B.DC-SIGN, a dendritic cell-specific HIV-1-binding protein that enhances trans-infection o Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@5357f509 Item: Title: We thank the patients for participating in the SHCS and MACS. We thank Nimisha Chaturvedi and Victor Urrea for their excellent statistical assistance. The members of the SHCS are Aubert V., Battegay M., Bernasconi E., Böni J., Braun D.L., Bucher H.C., Bur Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@33984c9e Item: Title: ACKNOWLEDGEMENTS Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@53ce3388 Item: Title: Author contributions Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@69950b4 Item: Title: Additional information Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@3b815cce Info: Title: Identification of Siglec-1 null individuals infected with HIV-1 Author: Paul J. 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McLaren Itziar Erkizia Maureen P. Martin Susana Benet Margalida Rotger Judith Dalmau Dan Ouchi Steven M. Wolinsky Sudhir Penugonda Huldrych F. Günthard Jacques Fellay Mary Carrington Javier Martinez-Picado Nuria Izquierdo-Useros Amalio Telenti Nature Communications 7, (2016). doi:10.1038/ncomms12412 Nature Publishing Group © 2016 The Author(s) Identification of Siglec-1 null individuals infected with HIV-1 Acrobat Distiller 8.1.0 (Windows) © 2016 The Author(s) 10.1038/ncomms12412 2041-1723 7 Nature Communications permissions@nature.com 1 7 -- http://dx.doi.org/10.1038/ncomms12412 2016-08-02T07:01:05Z Arbortext Advanced Print Publisher 9.0.226/W -- 2016-08-05T11:21:49+05:30 2016-08-05T11:21:49+05:30 doi:10.1038/ncomms12412 True uuid:95a9db31-7da4-4e5b-9a7b-4cb24110c268 uuid:b9d4c067-341d-4506-be2d-24d8b8d668ff Pages: Page: Label: 1 Annotations: Annotation: Subtype: Link Rect: 92, 43, 164, 51 Annotation: Subtype: Link Rect: 236, 43, 312, 51 Annotation: Subtype: Link Rect: 376, 43, 430, 51 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Page: Label: 2 Annotations: Annotation: Subtype: Link Rect: 70, 674, 79, 681 Destination: 111 Annotation: Subtype: Link Rect: 254, 653, 266, 661 Destination: 111 Annotation: Subtype: Link Rect: 285, 632, 289, 640 Destination: 111 Annotation: Subtype: Link Rect: 107, 601, 110, 608 Destination: 111 Annotation: Subtype: Link Rect: 59, 590, 73, 598 Destination: 111 Annotation: Subtype: Link Rect: 134, 569, 147, 577 Destination: 111 Annotation: Subtype: Link Rect: 91, 559, 109, 566 Destination: 111 Annotation: Subtype: Link Rect: 100, 496, 108, 504 Destination: 111 Annotation: Subtype: Link Rect: 120, 423, 127, 430 Destination: 111 Annotation: Subtype: Link Rect: 196, 412, 214, 420 Destination: 111 Annotation: Subtype: Link Rect: 62, 391, 78, 399 Destination: 111 Annotation: Subtype: Link Rect: 218, 370, 225, 378 Destination: 111 Annotation: Subtype: Link Rect: 46, 168, 72, 177 Destination: 33 Annotation: Subtype: Link Rect: 365, 701, 395, 711 Destination: 33 Annotation: Subtype: Link Rect: 418, 565, 444, 575 Destination: 54 Annotation: Subtype: Link Rect: 306, 523, 332, 533 Destination: 54 Annotation: Subtype: Link Rect: 518, 503, 546, 512 Destination: 111 Annotation: Subtype: Link Rect: 488, 471, 517, 481 Destination: 54 Annotation: Subtype: Link Rect: 450, 419, 478, 428 Destination: 54 Annotation: Subtype: Link Rect: 306, 377, 331, 386 Destination: 54 Annotation: Subtype: Link Rect: 373, 325, 400, 334 Destination: 54 Annotation: Subtype: Link Rect: 380, 304, 405, 313 Destination: 54 Annotation: Subtype: Link Rect: 371, 283, 399, 292 Destination: 54 Annotation: Subtype: Link Rect: 391, 245, 399, 253 Destination: 111 Annotation: Subtype: Link Rect: 436, 23, 551, 30 Thumb: true Page: Label: 3 Annotations: Annotation: Subtype: Link Rect: 190, 74, 211, 84 Destination: 69 Annotation: Subtype: Link Rect: 197, 53, 223, 63 Destination: 69 Annotation: Subtype: Link Rect: 262, 43, 288, 52 Destination: 69 Annotation: Subtype: Link Rect: 352, 64, 380, 73 Destination: 69 Annotation: Subtype: Link Rect: 345, 43, 371, 52 Destination: 69 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Page: Label: 4 Annotations: Annotation: Subtype: Link Rect: 125, 272, 150, 282 Destination: 69 Annotation: Subtype: Link Rect: 367, 276, 374, 284 Destination: 123 Annotation: Subtype: Link Rect: 486, 151, 493, 158 Destination: 111 Annotation: Subtype: Link Rect: 363, 67, 370, 75 Destination: 111 Annotation: Subtype: Link Rect: 436, 23, 551, 30 Thumb: true Page: Label: 5 Annotations: Annotation: Subtype: Link Rect: 422, 57, 429, 64 Destination: 111 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Page: Label: 6 Annotations: Annotation: Subtype: Link Rect: 186, 726, 194, 734 Destination: 111 Annotation: Subtype: Link Rect: 177, 617, 183, 623 Destination: 123 Annotation: Subtype: Link Rect: 222, 617, 227, 623 Destination: 123 Annotation: Subtype: Link Rect: 175, 301, 178, 307 Destination: 111 Annotation: Subtype: Link Rect: 70, 258, 72, 264 Destination: 111 Annotation: Subtype: Link Rect: 436, 23, 551, 30 Thumb: true Page: Label: 7 Annotations: Annotation: Subtype: Link Rect: 475, 534, 538, 541 Annotation: Subtype: Link Rect: 303, 525, 371, 532 Annotation: Subtype: Link Rect: 406, 422, 528, 429 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Checksum: e607b269 Type: CRC32 Checksum: 97b95d9d6b3f2c20b9ed5c454338f4b5 Type: MD5 Checksum: b9a2e0f71bc9ed3fbc55fa31399ecd67225c3094 Type: SHA-1