54008a7c0c789e3df98a7a1c6d1d7b7b 2016_BMC_Bioinformatics.pdf 3852fa72b6f6ce98b2dc4bfbb9c6d6d5f04d18df 2016_BMC_Bioinformatics.pdf 882bc543e71a45f47ddf992fb5b85e8a2ef4ec2f5d33ac85c44e314eba6680d4 2016_BMC_Bioinformatics.pdf Title: Assessment of transfer methods for comparative genomics of regulatory networks in bacteria Subject: BMC Bioinformatics, 2016, doi:10.1186/s12859-016-1113-7 Keywords: Comparative genomics,Regulatory networks,Transcription factor,Benchmark,Transfer,Motifs,Site search,Regulon,AUC Author: Sefa Kılıç Creator: Arbortext Advanced Print Publisher 9.1.440/W Unicode Producer: Acrobat Distiller 10.1.5 (Windows) CreationDate: Thu Jul 21 07:41:19 2016 CEST ModDate: Thu Jul 21 07:42:26 2016 CEST Tagged: no UserProperties: no Suspects: no Form: none JavaScript: no Pages: 10 Encrypted: no Page size: 595.276 x 790.866 pts Page rot: 0 File size: 1419848 bytes Optimized: yes PDF version: 1.3 name type encoding emb sub uni object ID ------------------------------------ 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2024-02-08 03:13:01 CET RepresentationInformation: 2016_BMC_Bioinformatics.pdf ReportingModule: PDF-hul, Rel. 1.12.4 (2023-03-16) LastModified: 2024-02-06 11:36:49 CET Size: 1419848 Format: PDF Version: 1.3 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf Profile: Linearized PDF PDFMetadata: Objects: 404 FreeObjects: 1 IncrementalUpdates: 1 DocumentCatalog: PageLayout: SinglePage PageMode: UseNone Outlines: Item: Title: Abstract Destination: sectionAbs1 Children: Item: Title: Background Destination: sectionASec1 Item: Title: Results Destination: sectionASec2 Item: Title: Conclusions Destination: sectionASec3 Item: Title: Background Destination: sectionSec1 Item: Title: Results and discussion Destination: sectionSec2 Children: Item: Title: Data compilation and evaluation of metrics for the assessment of transfer methods Destination: sectionSec3 Item: Title: Comparison of transfer methods Destination: sectionSec4 Item: Title: Predictive indicators of transfer accuracy Destination: sectionSec5 Item: Title: Conclusions Destination: sectionSec6 Item: Title: Methods Destination: sectionSec7 Children: Item: Title: TF-binding site and genome data Destination: sectionSec8 Item: Title: TF-binding site search and motif discovery Destination: sectionSec9 Item: Title: Transfer methods Destination: sectionSec10 Item: Title: Assessment metrics Destination: sectionSec11 Item: Title: Additional files Destination: sectionSec13 Item: Title: show [g] Destination: section Item: Title: Acknowledgements Destination: sections12859-016-1113-7 Item: Title: Declarations Destination: sectionFPar1 Item: Title: Funding Destination: sectionFPar2 Item: Title: Availability of data and materials Destination: sectionFPar3 Item: Title: Authors’ contributions Destination: sectionFPar4 Item: Title: Competing interests Destination: sectionFPar5 Item: Title: Consent for publication Destination: sectionFPar6 Item: Title: Ethics approval and consent to participate 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