97b95d9d6b3f2c20b9ed5c454338f4b5 pmc_27510803.pdf b9a2e0f71bc9ed3fbc55fa31399ecd67225c3094 pmc_27510803.pdf 4f76efa391a135b60add52fcaef37555982fffbcb1b794fbc1315c9acbd87aee pmc_27510803.pdf Title: Identification of Siglec-1 null individuals infected with HIV-1 Subject: Nature Communications 7, (2016). doi:10.1038/ncomms12412 Author: Paul J. McLaren Creator: Arbortext Advanced Print Publisher 9.0.226/W Producer: Acrobat Distiller 8.1.0 (Windows) CreationDate: Tue Aug 2 09:01:05 2016 CEST ModDate: Fri Aug 5 07:51:49 2016 CEST Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 7 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 632296 bytes Optimized: yes PDF version: 1.6 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- DJDLDD+AdvOTea1a7398 Type 1C Custom yes yes yes 309 0 DJDLDE+AdvOT9bd21c25.I Type 1C Custom yes yes yes 310 0 DJDLDF+AdvEls-ent7 Type 1C WinAnsi yes yes no 311 0 DJDLDG+AdvOTcb88df00 Type 1C Custom yes yes yes 324 0 DJDLKE+Arial-BoldMT Type 1C WinAnsi yes yes no 325 0 DJDLPD+AdvOTf23bb480 Type 1C Custom yes yes yes 326 0 DJDLPE+AdvTimes-i Type 1C Custom yes yes yes 327 0 DJDMIC+AdvTTda6f6cb8.B Type 1C Custom yes yes yes 337 0 DJDNGB+AdvP4C4E74 Type 1C Custom yes yes yes 159 0 DJDNGC+AdvPi1 Type 1C WinAnsi yes yes no 160 0 DJDNGD+AdvOTb65e897d.B Type 1C Custom yes yes yes 158 0 DJDNHD+AdvEls-ent4 Type 1C WinAnsi yes yes no 142 0 DJDNHE+AdvOT45bf69de.BI Type 1C Custom yes yes yes 143 0 DJDNEO+AdvOT125c650c Type 1C Custom yes yes yes 156 0 DJDNEP+AdvOT1ef757c0 Type 1C Custom yes yes yes 148 0 DJDNGA+AdvOT7d6df7ab.I Type 1C Custom yes yes yes 162 0 DJEMFK+Helvetica Type 1C Custom yes yes no 172 0 DJEMHK+Helvetica-Oblique Type 1C WinAnsi yes yes no 173 0 DJEPBL+AdvOTe75a9404.I Type 1C Custom yes yes yes 181 0 DJEPMI+Symbol Type 1C Custom yes yes yes 184 0 DJEPNI+Helvetica-Bold Type 1C WinAnsi yes yes no 185 0 DJFFEI+Advsymbol Type 1C Custom yes yes no 200 0 DJFGAF+AdvEls-ent3 Type 1C WinAnsi yes yes no 201 0 Jhove (Rel. 1.22.1, 2019-04-17) Date: 2023-02-16 02:47:00 CET RepresentationInformation: pmc_27510803.pdf ReportingModule: PDF-hul, Rel. 1.12.1 (2019-04-17) LastModified: 2020-08-10 03:43:42 CEST Size: 632296 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf Profile: Linearized PDF PDFMetadata: Objects: 365 FreeObjects: 1 IncrementalUpdates: 1 DocumentCatalog: PageLayout: SinglePage PageMode: UseNone Outlines: Item: Title: title_link Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4d3167f4 Children: Item: Title: Results Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@ed9d034 Children: Item: Title: Genetic description of SIGLEC1 variants Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6121c9d6 Item: Title: Functional analysis of SIGLEC1 null variant Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@87f383f Item: Title: SIGLEC1 null variant in HIV-1 acquisition Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4eb7f003 Item: Title: SIGLEC1 null variant in HIV-1 progression Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@eafc191 Item: Title: Figure™1Location and frequency of SIGLEC1 protein truncating variants.Protein domains are represented in different colours. Data from the Exome Aggregation Consortium (exac.broadinstitute.org) identifies 70 protein truncating variants in SIGLEC1 including Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@612fc6eb Item: Title: Table 1 Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@1060b431 Item: Title: Discussion Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@612679d6 Item: Title: Figure™2Siglec-1 expression and trans-infection across distinct SIGLEC1 genotypes.Monocytes were isolated and cultured 24thinsph in the presence of 1,000 Uthinspml-1 of IFNagr to induce Siglec-1 expression. (a) Quantification of Siglec-1 expression levels Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@11758f2a Item: Title: Figure™3Analysis of association between Siglec-1 Glu88Ter and HIV-1 clinical outcomes in the absence of antiretroviral treatment.(a) Set point viral load of individuals from the SHCS with or without the Glu88Ter allele (n=2,243). (b) CD4+ T- cell count dy Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@e720b71 Item: Title: Methods Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@1b26f7b2 Children: Item: Title: Patients Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@491cc5c9 Item: Title: Ethics statement Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@74ad1f1f Item: Title: Primary cell culture Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6a1aab78 Item: Title: Siglec-1 surface expression analysis by FACS Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@462d5aee Item: Title: VLP capture and HIV-1 trans-infection assays Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@69b0fd6f Item: Title: Genetic analyses Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@757942a1 Item: Title: Statistical analysis Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4a87761d Item: Title: Data availability Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@66d1af89 Item: Title: CameronP. U.Dendritic cells exposed to human immunodeficiency virus type-1 transmit a vigorous cytopathic infection to CD4+ T cellsScience2573833871992GeijtenbeekT. B.DC-SIGN, a dendritic cell-specific HIV-1-binding protein that enhances trans-infection o Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@8646db9 Item: Title: We thank the patients for participating in the SHCS and MACS. We thank Nimisha Chaturvedi and Victor Urrea for their excellent statistical assistance. The members of the SHCS are Aubert V., Battegay M., Bernasconi E., Böni J., Braun D.L., Bucher H.C., Bur Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@37374a5e Item: Title: ACKNOWLEDGEMENTS Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4671e53b Item: Title: Author contributions Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2db7a79b Item: Title: Additional information Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6950e31 Info: Title: Identification of Siglec-1 null individuals infected with HIV-1 Author: Paul J. 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McLaren Itziar Erkizia Maureen P. Martin Susana Benet Margalida Rotger Judith Dalmau Dan Ouchi Steven M. Wolinsky Sudhir Penugonda Huldrych F. Günthard Jacques Fellay Mary Carrington Javier Martinez-Picado Nuria Izquierdo-Useros Amalio Telenti Nature Communications 7, (2016). doi:10.1038/ncomms12412 Nature Publishing Group © 2016 The Author(s) Identification of Siglec-1 null individuals infected with HIV-1 Acrobat Distiller 8.1.0 (Windows) © 2016 The Author(s) 10.1038/ncomms12412 2041-1723 7 Nature Communications permissions@nature.com 1 7 -- http://dx.doi.org/10.1038/ncomms12412 2016-08-02T07:01:05Z Arbortext Advanced Print Publisher 9.0.226/W -- 2016-08-05T11:21:49+05:30 2016-08-05T11:21:49+05:30 doi:10.1038/ncomms12412 True uuid:95a9db31-7da4-4e5b-9a7b-4cb24110c268 uuid:b9d4c067-341d-4506-be2d-24d8b8d668ff Pages: Page: Label: 1 Annotations: Annotation: Subtype: Link Rect: 92, 43, 164, 51 Annotation: Subtype: Link Rect: 236, 43, 312, 51 Annotation: Subtype: Link Rect: 376, 43, 430, 51 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Page: Label: 2 Annotations: Annotation: Subtype: Link Rect: 70, 674, 79, 681 Destination: 111 Annotation: Subtype: Link Rect: 254, 653, 266, 661 Destination: 111 Annotation: Subtype: Link Rect: 285, 632, 289, 640 Destination: 111 Annotation: Subtype: Link Rect: 107, 601, 110, 608 Destination: 111 Annotation: Subtype: Link Rect: 59, 590, 73, 598 Destination: 111 Annotation: Subtype: Link Rect: 134, 569, 147, 577 Destination: 111 Annotation: Subtype: Link Rect: 91, 559, 109, 566 Destination: 111 Annotation: Subtype: Link Rect: 100, 496, 108, 504 Destination: 111 Annotation: Subtype: Link Rect: 120, 423, 127, 430 Destination: 111 Annotation: Subtype: Link Rect: 196, 412, 214, 420 Destination: 111 Annotation: Subtype: Link Rect: 62, 391, 78, 399 Destination: 111 Annotation: Subtype: Link Rect: 218, 370, 225, 378 Destination: 111 Annotation: Subtype: Link Rect: 46, 168, 72, 177 Destination: 33 Annotation: Subtype: Link Rect: 365, 701, 395, 711 Destination: 33 Annotation: Subtype: Link Rect: 418, 565, 444, 575 Destination: 54 Annotation: Subtype: Link Rect: 306, 523, 332, 533 Destination: 54 Annotation: Subtype: Link Rect: 518, 503, 546, 512 Destination: 111 Annotation: Subtype: Link Rect: 488, 471, 517, 481 Destination: 54 Annotation: Subtype: Link Rect: 450, 419, 478, 428 Destination: 54 Annotation: Subtype: Link Rect: 306, 377, 331, 386 Destination: 54 Annotation: Subtype: Link Rect: 373, 325, 400, 334 Destination: 54 Annotation: Subtype: Link Rect: 380, 304, 405, 313 Destination: 54 Annotation: Subtype: Link Rect: 371, 283, 399, 292 Destination: 54 Annotation: Subtype: Link Rect: 391, 245, 399, 253 Destination: 111 Annotation: Subtype: Link Rect: 436, 23, 551, 30 Thumb: true Page: Label: 3 Annotations: Annotation: Subtype: Link Rect: 190, 74, 211, 84 Destination: 69 Annotation: Subtype: Link Rect: 197, 53, 223, 63 Destination: 69 Annotation: Subtype: Link Rect: 262, 43, 288, 52 Destination: 69 Annotation: Subtype: Link Rect: 352, 64, 380, 73 Destination: 69 Annotation: Subtype: Link Rect: 345, 43, 371, 52 Destination: 69 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Page: Label: 4 Annotations: Annotation: Subtype: Link Rect: 125, 272, 150, 282 Destination: 69 Annotation: Subtype: Link Rect: 367, 276, 374, 284 Destination: 123 Annotation: Subtype: Link Rect: 486, 151, 493, 158 Destination: 111 Annotation: Subtype: Link Rect: 363, 67, 370, 75 Destination: 111 Annotation: Subtype: Link Rect: 436, 23, 551, 30 Thumb: true Page: Label: 5 Annotations: Annotation: Subtype: Link Rect: 422, 57, 429, 64 Destination: 111 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Page: Label: 6 Annotations: Annotation: Subtype: Link Rect: 186, 726, 194, 734 Destination: 111 Annotation: Subtype: Link Rect: 177, 617, 183, 623 Destination: 123 Annotation: Subtype: Link Rect: 222, 617, 227, 623 Destination: 123 Annotation: Subtype: Link Rect: 175, 301, 178, 307 Destination: 111 Annotation: Subtype: Link Rect: 70, 258, 72, 264 Destination: 111 Annotation: Subtype: Link Rect: 436, 23, 551, 30 Thumb: true Page: Label: 7 Annotations: Annotation: Subtype: Link Rect: 475, 534, 538, 541 Annotation: Subtype: Link Rect: 303, 525, 371, 532 Annotation: Subtype: Link Rect: 406, 422, 528, 429 Annotation: Subtype: Link Rect: 242, 23, 357, 30 Thumb: true Checksum: e607b269 Type: CRC32 Checksum: 97b95d9d6b3f2c20b9ed5c454338f4b5 Type: MD5 Checksum: b9a2e0f71bc9ed3fbc55fa31399ecd67225c3094 Type: SHA-1