abcef45c41a2b3e1139de4506af7713f pmc_28642465.pdf 8f16262ff02e1e7ecf2267aef0a19ae3a83493e7 pmc_28642465.pdf 1d35043a7b23020e31641b01abc7d4e9f1b143926b99113e9fdd52dfab36553b pmc_28642465.pdf Title: Structural basis for biologically relevant mechanical stiffening of a virus capsid by cavity-creating or spacefilling mutations Subject: Scientific Reports, doi:10.1038/s41598-017-04345-w Keywords: Author: Pablo Guerra Creator: Springer Producer: iTextSharp™ 5.5.1 ©2000-2014 iText Group NV (AGPL-version); modified using iText® 5.3.5 ©2000-2012 1T3XT BVBA (AGPL-version) CreationDate: Wed Jun 14 11:38:02 2017 CEST ModDate: Fri Jun 16 16:51:59 2017 CEST Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 13 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 6205154 bytes Optimized: no PDF version: 1.6 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- DYDFCM+Corbel CID TrueType Identity-H yes yes yes 572 0 EFNSQK+TimesNewRomanPSMT TrueType WinAnsi yes yes yes 573 0 Corbel-Bold TrueType WinAnsi yes no yes 149 0 AMLIMS+Corbel-Bold CID TrueType Identity-H yes yes yes 150 0 Corbel TrueType WinAnsi yes no yes 16 0 MinionPro-Regular Type 1C Custom yes no yes 17 0 Corbel-Bold TrueType WinAnsi yes no yes 606 0 WIMVGA+Corbel CID TrueType Identity-H yes yes yes 607 0 Corbel TrueType WinAnsi yes no yes 608 0 MyriadPro-It Type 1C WinAnsi yes no yes 609 0 MinionPro-Bold Type 1C Custom yes no yes 13 0 EuclidSymbol Type 1C Custom yes no yes 14 0 MinionPro-It Type 1C Custom yes no yes 15 0 Corbel TrueType WinAnsi yes no yes 70 0 Corbel-Bold TrueType WinAnsi yes no yes 71 0 FGCJCI+Corbel CID TrueType Identity-H yes yes yes 72 0 Corbel TrueType WinAnsi yes no yes 73 0 MyriadPro-It Type 1C WinAnsi yes no yes 74 0 Corbel TrueType WinAnsi yes no yes 181 0 Corbel-Bold TrueType WinAnsi yes no yes 182 0 FVAPXI+Corbel CID TrueType Identity-H yes yes yes 183 0 Corbel TrueType WinAnsi yes no yes 184 0 MyriadPro-It Type 1C WinAnsi yes no yes 185 0 MinionPro-BoldIt Type 1C WinAnsi yes no yes 226 0 EuclidSymbol-Bold Type 1C Custom yes no yes 227 0 Corbel-Bold TrueType WinAnsi yes no yes 232 0 NWGHFS+Corbel CID TrueType Identity-H yes yes yes 233 0 Corbel TrueType WinAnsi yes no yes 234 0 MyriadPro-It Type 1C WinAnsi yes no yes 235 0 HSGYBE+STIXGeneral-Regular Type 1C Custom yes yes yes 245 0 Corbel-Bold TrueType WinAnsi yes no yes 255 0 PTEMXO+Corbel CID TrueType Identity-H yes yes yes 256 0 Corbel TrueType WinAnsi yes no yes 257 0 MyriadPro-It Type 1C WinAnsi yes no yes 258 0 Jhove (Rel. 1.28.0, 2023-05-18) Date: 2024-02-08 02:58:56 CET RepresentationInformation: pmc_28642465.pdf ReportingModule: PDF-hul, Rel. 1.12.4 (2023-03-16) LastModified: 2018-02-08 07:57:47 CET Size: 6205154 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf PDFMetadata: Objects: 705 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: false NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: SinglePage PageMode: UseOutlines Language: EN Outlines: Item: Title: Structural basis for biologically relevant mechanical stiffening of a virus capsid by cavity-creating or spacefilling mutat ... Children: Item: Title: Results and Discussion Children: Item: Title: Compared local and global mechanical effects of cavity-creating N170A and spacefilling L172W mutations in the MVM capsid. Item: Title: Compared effects on capsid conformational dynamics of N170A and L172W mutations. Item: Title: Crystal structure of a mechanically stiffened N170A mutant MVM capsid, and comparison with the non-mutated capsid structure ... Item: Title: Compared structural effects of N170A and L172W mutations in the MVM capsid. Item: Title: Structural effects that may underlie mutation-induced mechanical stiffening of a virus particle. Item: Title: Biological implications. Item: Title: Nanotechnological and biomedical implications. Item: Title: Conclusion Item: Title: Methods Children: Item: Title: Recombinant plasmids and mutagenesis. Item: Title: Expression and purification of MVM capsids. Item: Title: Crystallization, data collection and processing. Item: Title: Structure solution and refinement. Item: Title: Atomic force microscopy. Item: Title: Statistical analysis of mechanical data. Item: Title: Acknowledgements Item: Title: Figure 1 The MVM capsid. Item: Title: Figure 2 Topography and mechanical stiffness of wt and mutant MVM capsids. Item: Title: Figure 3 2Fo–Fc averaged electron density corresponding to the N170A mutant MVMp capsid structure (1. Item: Title: Figure 4 Surface representation of the region around a S5 axis in the MVMp capsid. Item: Title: Figure 5 Comparison between the VP2 structure in the wt and mutant N170A MVMp capsids. Item: Title: Figure 6 Structure of VP2 in the MVM capsid, color-coded according to normalized B-factors per residue. Item: Title: Table 1 Elastic constant ks valuesa determined for MVM capsids (wt and N170A and L172W mutants) along S2, S3 or S5 axes. Item: Title: Table 2 X-ray data collection and refinement statistics for the N170A mutant MVMp capsid. 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basis for biologically relevant mechanical stiffening of a virus capsid by cavity-creating or spacefilling mutations Pablo Guerra Alejandro Valbuena Jordi Querol-Audamp#x000ED; Cristina Silva Milagros Castellanos Alicia Rodramp#x000ED;guez-Huete Damiamp#x000E0; Garriga Mauricio G. 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