406b1fe34f10f9fef100faf361a7f4ab pmc_28090086.pdf 8e5bb1572936786ea2ad87b09de3708a56c59980 pmc_28090086.pdf 98e4593bac810a17be2fab63d43ff4b0178b2b853456244e760a482573ba8884 pmc_28090086.pdf Title: Centrality in the host–pathogen interactome is associated with pathogen fitness during infection Subject: Nature Communications 8, (2017). doi:10.1038/ncomms14092 Author: Núria Crua Asensio Creator: Arbortext Advanced Print Publisher 9.0.226/W Producer: Acrobat Distiller 8.1.0 (Windows) CreationDate: Mon Jan 9 11:57:27 2017 CET ModDate: Tue Jan 10 08:07:11 2017 CET Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 6 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 6057784 bytes Optimized: yes PDF version: 1.6 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- BLCFMO+AdvOTea1a7398 Type 1C Custom yes yes yes 251 0 BLCFNO+AdvOT9bd21c25.I Type 1C Custom yes yes yes 252 0 BLCFNP+AdvOTcb88df00 Type 1C Custom yes yes yes 264 0 BLCGDO+Arial-BoldMT Type 1C WinAnsi yes yes no 265 0 BLCGFO+AdvOTf23bb480 Type 1C Custom yes yes yes 266 0 BLCGOM+AdvTTda6f6cb8.B Type 1C Custom yes yes yes 276 0 BLCHGP+AdvOT45bf69de.BI Type 1C Custom yes yes yes 113 0 BLCHHA+AdvEls-ent7 Type 1C WinAnsi yes yes no 112 0 BLCHEL+AdvOT125c650c Type 1C Custom yes yes yes 118 0 BLCHEM+AdvOT1ef757c0 Type 1C Custom yes yes yes 119 0 BLCHFM+AdvOT7d6df7ab.I Type 1C Custom yes yes yes 122 0 BLCHFN+AdvOTb65e897d.B Type 1C Custom yes yes yes 109 0 BLCHFO+AdvP4C4E74 Type 1C Custom yes yes yes 110 0 BLCHNO+Helvetica Type 1C Custom yes yes no 135 0 BLCHNP+Helvetica-Oblique Type 1C WinAnsi yes yes no 136 0 BLCIAP+Helvetica-Bold Type 1C WinAnsi yes yes no 129 0 BLCIEP+AdvOTe75a9404.I Type 1C Custom yes yes yes 125 0 BLCIOM+AdvEls-ent4 Type 1C WinAnsi yes yes no 147 0 BLCJFK+MathPackTen Type 1C Custom yes yes no 149 0 BLKNFA+AdvPi2 Type 1C WinAnsi yes yes no 142 0 BLKNFB+AdvP4C4E51 Type 1C Custom yes yes yes 140 0 BLKNMP+AdvP4C4E46 Type 1C Custom yes yes yes 152 0 BLKPHG+AdvP4C4E59 Type 1C Custom yes yes no 153 0 BLLAAE+AdvEls-ent3 Type 1C WinAnsi yes yes no 154 0 Jhove (Rel. 1.6, 2011-01-04) Date: 2019-02-14 18:14:05 CET RepresentationInformation: pmc_28090086.pdf ReportingModule: PDF-hul, Rel. 1.8 (2009-05-22) LastModified: 2018-02-08 08:14:45 CET Size: 6057784 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf Profile: Linearized PDF PDFMetadata: Objects: 299 FreeObjects: 1 IncrementalUpdates: 1 DocumentCatalog: PageLayout: SinglePage PageMode: UseNone Outlines: Item: Title: title_link Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@16f65612 Children: Item: Title: Results Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@311d617d Children: Item: Title: Hubs in the interactome are central for pathogen fitness Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7c53a9eb Item: Title: Connectivity explains in™vivo and in™vitro fitness changes Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@ed17bee Item: Title: Pathogens target but not disrupt host networks Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2a33fae0 Item: Title: Discussion Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@707f7052 Item: Title: Figure™1Analysis of the centrality-lethality rule in Yersinia pestis.The percentage of essential proteins both in™vivo (during infection) and in™vitro (growth in culture medium) was plotted against its degree in (a) the pathogen (green) and (b) the host-p Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@11028347 Item: Title: Methods Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@14899482 Children: Item: Title: Databases Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@21588809 Item: Title: Statistical analyses Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2aae9190 Item: Title: Figure™2Analysis of fitness shifting during Y. pestis infection.(a) Representation of in™vivo against in™vitro fitness z-scores (calculated according to z =( x ) / ). Proteins that rank 2.5 times higher in™vivo than in™vitro are coloured red while those Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2f333739 Children: Item: Title: Calculation of network parameters Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@77468bd9 Item: Title: Function enrichment Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@12bb4df8 Item: Title: Figure™3Simulation of the host network attack by the pathogen Y. pestis.In a we present an exemplar of the three attack strategies used, in this case for the endocytosis pathway. The endocytosis network (a) was subjected to successive node removal accordi Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4cc77c2e Children: Item: Title: Data availability Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7a7b0070 Item: Title: YangH.Insight into bacterial virulence mechanisms against host immune response via the Yersinia pestis-human protein-protein interaction networkInfect. Immun.79441344242011DyerM. D.MuraliT. M.SobralB. W.The landscape of human proteins interacting with vir Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@39a054a5 Item: Title: M.T.B. would like to acknowledge support from the Programa Ramón y Cajal (RYC-2012-09999). This study has been funded by the Ministerio de Economía y Competitividad (SAF2014-56568-R) and a Research Grant 2016 by the European Society of Clinical Microbiolo Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@71bc1ae4 Item: Title: ACKNOWLEDGEMENTS Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6ed3ef1 Item: Title: Author contributions Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2437c6dc Item: Title: Additional information Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@1f89ab83 Info: Title: Centrality in the host–pathogen interactome is associated with pathogen fitness during infection Author: Núria Crua Asensio Subject: Nature Communications 8, (2017). doi:10.1038/ncomms14092 Creator: Arbortext Advanced Print Publisher 9.0.226/W Producer: Acrobat Distiller 8.1.0 (Windows) CreationDate: Mon Jan 09 11:57:27 CET 2017 ModDate: Tue Jan 10 08:37:11 CET 2017 ID: 0x38038b6a567faf2427e0e025640589da, 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