7b30c2e0e10aac99e72a3009213a71a5 pmc_29434351.pdf 7ca97cf1a210bc18fff7f247e5daf25c218fd498 pmc_29434351.pdf 19ecfc5a25cd9227ba17a1df4e53cc13fa5c30e31851ede0301dab127a29241b pmc_29434351.pdf Title: Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly Keywords: asexual reproduction, genome decay, clonal diversity, ameiosis, hybrid genome, introgression, immune genes Author: Wesley C. Warren, Raquel García-Pérez, Sen Xu, Kathrin P. Lampert, Domitille Chalopin, Matthias Stöck, Laurence Loewe, Yuan Lu, Lukas Kuderna, Patrick Minx, Michael J. Montague, Chad Tomlinson, LaDeana W. Hillier, Daniel N. Murphy, John Wang, Zhongwei Wang, Constantino Macias Garcia, Gregg W. C. Thomas, Jean-Nicolas Volff, Fabiana Farias, Bronwen Aken, Ronald B. Walter, Kim D. Pruitt, Tomas Marques-Bonet, Matthew W. Hahn, Susanne Kneitz, Michael Lynch, Manfred Schartl Creator: AH XSL Formatter V6.3 R1 for Linux64 : 6.3.1.23495 (2016/02/03 14:39JST) Producer: Antenna House PDF Output Library 6.3.752 (Linux64) CreationDate: Mon Mar 26 06:55:57 2018 CEST ModDate: Mon Mar 26 06:55:57 2018 CEST Tagged: yes UserProperties: no Suspects: no Form: none JavaScript: no Pages: 28 Encrypted: no Page size: 612 x 792 pts (letter) Page rot: 0 File size: 1078992 bytes Optimized: no PDF version: 1.5 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- Times-Roman Type 1 Custom no no yes 11 0 Helvetica-Bold Type 1 Custom no no yes 13 0 Helvetica Type 1 Custom no no yes 16 0 Times-Bold Type 1 Standard no no no 72 0 BTYSWP+Code2000 CID TrueType Identity-H yes yes yes 408 0 Times-BoldItalic Type 1 Standard no no no 687 0 Jhove (Rel. 1.28.0, 2023-05-18) Date: 2024-01-19 07:11:57 CET RepresentationInformation: pmc_29434351.pdf ReportingModule: PDF-hul, Rel. 1.12.4 (2023-03-16) LastModified: 2020-02-24 03:46:47 CET Size: 1078992 Format: PDF Version: 1.5 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf Profile: Tagged PDF PDFMetadata: Objects: 0 FreeObjects: 86 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: true NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: SinglePage PageMode: UseOutlines Language: EN Outlines: Item: Title: Abstract Item: Title: Results Children: Item: Title: Genome assembly and gene annotation Item: Title: Transposable element history and activity Item: Title: Gene evolution Item: Title: Ancestry and evolutionary age of the Amazon molly Item: Title: Gene conversion Item: Title: Paternal introgression Item: Title: Hybrid genome constitution Item: Title: Discussion Item: Title: Methods Children: Item: Title: Biological material Item: Title: Sequencing and assembly Item: Title: Gene annotation Item: Title: SNP and heterozygosity analysis Item: Title: Mitochondrial genome analyses Item: Title: Repeat analyses Item: Title: Gene selection Item: Title: Immune genes Item: Title: Allele-specific gene expression analysis Item: Title: Detection of segmental duplications, copy number variations Item: Title: Paternal introgression Item: Title: Data availability Item: Title: References Item: Title: Figure 1 Item: Title: Figure 2 Item: Title: Figure 3 Item: Title: Figure 4 Item: Title: Figure 5 Item: Title: Figure 6 Filters: FilterPipeline: FlateDecode FilterPipeline: DCTDecode Images: Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 152 ImageHeight: 152 ColorSpace: RGB BitsPerSample: 8 BitsPerSampleUnit: integer Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1050 ImageHeight: 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