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Title:          Genomic diversity in ochratoxigenic and non ochratoxigenic strains of Aspergillus carbonarius
Subject:        Scientific Reports, doi:10.1038/s41598-018-23802-8
Keywords:       
Author:         Gemma Castellamp#x000E1;
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     Item: 
      Title: Genomic diversity in ochratoxigenic and non ochratoxigenic strains of Aspergillus carbonarius
      Children: 
       Item: 
        Title: Results
        Children: 
         Item: 
          Title: OTA production in the A. carbonarius strains studied. 
         Item: 
          Title: Resequencing study. 
         Item: 
          Title: SNPs and DIPs analysis. 
         Item: 
          Title: CNV and SV analysis. 
         Item: 
          Title: Expression analysis of OTA genes in A. carbonarius. 
       Item: 
        Title: Discussion
       Item: 
        Title: Methods
        Children: 
         Item: 
          Title: OTA production ability detection. 
         Item: 
          Title: Genomic DNA extraction. 
         Item: 
          Title: Genomic DNA sequencing and alignment. 
         Item: 
          Title: SNPs and DIPs. 
         Item: 
          Title: CNV and SV analysis. 
         Item: 
          Title: Variant association with previous studies. 
         Item: 
          Title: RNA extraction and cDNA synthesis. 
         Item: 
          Title: Analysis of gene expression by RT-qPCR. 
         Item: 
          Title: Accession codes. 
       Item: 
        Title: Acknowledgements
       Item: 
        Title: Figure 1 HPLC-FLD chromatograms and mass spectra of (a) the OTA producing strain A.
       Item: 
        Title: Figure 2 Relative expression analysis by real time PCR of AcOTApks, AcOTAnrps, AcOTAhal, AcOTAbZIP and AcOTAp450 genes in A.
       Item: 
        Title: Figure 3 Schematic representation of the putative OTA biosynthetic gene cluster 38, located on scaffold 12 (931076-971429 nt).
       Item: 
        Title: Table 1 Ochratoxin A concentration (mean value in µg/g) detected in the 5 strains of A.
       Item: 
        Title: Table 2 Statistics of resequencing results.
       Item: 
        Title: Table 3 Summary of SNP and DIP analysis.
       Item: 
        Title: Table 4 Summary of SNP and DIP analysis in selected genes.
       Item: 
        Title: Table 5 Genes with common variants in atoxigenic strains.
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Permits publishers to include a second ISSN, identifying an electronic version of the issue in which the resource occurs (therefore e(lectronic)Issn. If used, prism:eIssn MUST contain the ISSN of the electronic version. See prism:issn. 
</pdfaProperty:description>
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                           <pdfaProperty:category>external</pdfaProperty:category>
                           <pdfaProperty:description>Title of the magazine, or other publication, in which a resource was/will be published. 
Typically this will be used to provide the name of the magazine an article appeared in as metadata for the article, along with information such as the article title, the publisher, volume, number, and cover date. 

Note: Publication name can be used to differentiate between a print magazine and the online version if the names are different such as “magazine” and “magazine.com.” 
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                        <rdf:li rdf:parseType="Resource">
                           <pdfaProperty:category>external</pdfaProperty:category>
                           <pdfaProperty:description>This element provides the url for an article or unit of content. 
The attribute platform is optionally allowed for situations in which multiple URLs must be specified. PRISM recommends that a subset of the PCV platform values, namely “mobile” and “web”, be used in conjunction with this element. 
NOTE: PRISM recommends against the use of the #other value allowed in the PRISM Platform controlled vocabulary. In lieu of using #other please reach out to the PRISM group at prism-wg@yahoogroups.com to request addition of your term to the Platform Controlled Vocabulary. 
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                           <pdfaProperty:category>external</pdfaProperty:category>
                           <pdfaProperty:description>Values for Journal Article Version are one of the following:
AO = Author’s Original
SMUR = Submitted Manuscript Under Review
AM = Accepted Manuscript
P = Proof
VoR = Version of Record
CVoR = Corrected Version of Record
EVoR = Enhanced Version of Record</pdfaProperty:description>
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