4e2322583a778dfe6218bc7e6b6635aa FronGen_a2019v10p299iEng.pdf 71f67794c6229a2e4d4706f7f5b06e1f79cafc9e FronGen_a2019v10p299iEng.pdf 982d859341b9b7548885b8927ac3ca72f302a1e2ed6bd516e676e4c95523ff1f FronGen_a2019v10p299iEng.pdf Title: A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes Subject: Understanding the molecular basis of cell function and ultimate phenotypes is crucial for the development of biological markers. Keywords: sperm, sperm RNA element, RNA-seq, sperm seasonality, transcript integrity, differential gene expression Author: Alex Clop Creator: LaTeX with hyperref package Producer: pdfTeX-1.40.15 CreationDate: Sun Apr 14 07:39:47 2019 CEST ModDate: Sun Apr 14 07:39:47 2019 CEST Tagged: no UserProperties: no Suspects: no Form: none JavaScript: no Pages: 14 Encrypted: no Page size: 595.276 x 779.528 pts Page rot: 0 File size: 1080729 bytes Optimized: no PDF version: 1.5 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- BVDSLT+MinionPro-Regular Type 1 Custom yes yes no 30 0 OEZZWC+HelveticaNeueLTStd-Bd Type 1 Custom yes yes no 31 0 CKSPKW+HelveticaNeueLTStd-Lt Type 1 Custom yes yes no 32 0 RDYUKE+HelveticaNeueLTStd-BdIt Type 1 Custom yes yes no 37 0 UEBASD+HelveticaNeueLTStd-LtIt Type 1 Custom yes yes no 38 0 FSBPLG+HelveticaNeueLTStd-MdIt Type 1 Custom yes yes no 39 0 CAIZON+MinionPro-Bold Type 1 Custom yes yes no 40 0 OJCDSN+MTSYN Type 1 Builtin yes yes no 130 0 KSPLHC+MinionPro-It Type 1 Custom yes yes no 145 0 XODHDR+RBLMI Type 1 Builtin yes yes no 247 0 Jhove (Rel. 1.22.1, 2019-04-17) Date: 2020-04-03 05:35:37 CEST RepresentationInformation: FronGen_a2019v10p299iEng.pdf ReportingModule: PDF-hul, Rel. 1.12.1 (2019-04-17) LastModified: 2020-04-02 16:28:04 CEST Size: 1080729 Format: PDF Version: 1.5 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf PDFMetadata: Objects: 1027 FreeObjects: 6 IncrementalUpdates: 0 DocumentCatalog: PageLayout: SinglePage PageMode: UseOutlines Outlines: Item: Title: A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes Children: Item: Title: Introduction Children: Item: Title: Semen Quality Is Highly Relevant for the Sustainability of Modern Pig Breeding Item: Title: The Sperm Cell Contains a Complex and Functionally Relevant Transcriptome Item: Title: The Boar Sperm Transcriptome Item: Title: Sperm Quality Has a Seasonal Component Item: Title: Materials and Methods Children: Item: Title: Sample Collection Item: Title: RNA Extraction, qPCR Validation, Library Prep and Sequencing Item: Title: Total RNA-Seq Mapping and Analysis of the Sperm RNA Elements Item: Title: De novo Transcriptome Analysis Item: Title: Repetitive Elements and Long Non-coding RNAs Item: Title: Transcript Integrity Item: Title: Analysis of the Short Non-coding RNAs Item: Title: Analysis of the Seasonal Variation of the Boar Sperm Transcriptome Item: Title: Results and Discussion Children: Item: Title: Total RNA-Seq Analysis: Characterization of Sperm RNA Elements Item: Title: Total RNA-Seq Analysis: Variance on the SRE Abundance Item: Title: Total RNA-Seq Analysis: Transcript Integrity Item: Title: Total RNA-Seq Analysis: De novo Transcriptome Assembly Item: Title: Total RNA-Seq Analysis: Repetitive Elements Item: Title: Total RNA-Seq Analysis: Long Non-coding RNAs Item: Title: Short RNA-Seq Analysis Item: Title: Seasonal Differences in the Boar Sperm Transcriptome Item: Title: Conclusion Item: Title: Ethics Statement Item: Title: Author Contributions Item: Title: Funding Item: Title: Acknowledgments Item: Title: Supplementary Material Item: Title: References Info: Title: A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes Author: Alex Clop Subject: Understanding the molecular basis of cell function and ultimate phenotypes is crucial for the development of biological markers. Keywords: sperm, sperm RNA element, RNA-seq, sperm seasonality, transcript integrity, differential gene expression Creator: LaTeX with hyperref package Producer: pdfTeX-1.40.15 CreationDate: Sun Apr 14 08:09:47 CEST 2019 ModDate: Sun Apr 14 08:09:47 CEST 2019 ID: 0xe22da63c285e33a76822583aa35ab869, 0xe22da63c285e33a76822583aa35ab869 Filters: FilterPipeline: FlateDecode Fonts: Type1: Font: BaseFont: CKSPKW+HelveticaNeueLTStd-Lt FontSubset: true FirstChar: 2 LastChar: 242 FontDescriptor: FontName: CKSPKW+HelveticaNeueLTStd-Lt Flags: Symbolic FontBBox: -166, -214, 1050, 967 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: KSPLHC+MinionPro-It FontSubset: true FirstChar: 3 LastChar: 243 FontDescriptor: FontName: KSPLHC+MinionPro-It Flags: Symbolic FontBBox: -201, -360, 1684, 919 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: OJCDSN+MTSYN FontSubset: true FirstChar: 0 LastChar: 48 FontDescriptor: FontName: OJCDSN+MTSYN Flags: Symbolic FontBBox: 0, -954, 1043, 900 FontFile: true Font: BaseFont: RDYUKE+HelveticaNeueLTStd-BdIt FontSubset: true FirstChar: 42 LastChar: 121 FontDescriptor: FontName: RDYUKE+HelveticaNeueLTStd-BdIt Flags: Symbolic FontBBox: -166, -218, 1129, 975 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: UEBASD+HelveticaNeueLTStd-LtIt FontSubset: true FirstChar: 2 LastChar: 243 FontDescriptor: FontName: UEBASD+HelveticaNeueLTStd-LtIt Flags: Symbolic FontBBox: -165, -214, 1099, 951 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: FSBPLG+HelveticaNeueLTStd-MdIt FontSubset: true FirstChar: 42 LastChar: 243 FontDescriptor: FontName: FSBPLG+HelveticaNeueLTStd-MdIt Flags: Symbolic FontBBox: -165, -218, 1125, 947 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: XODHDR+RBLMI FontSubset: true FirstChar: 60 LastChar: 62 FontDescriptor: FontName: XODHDR+RBLMI Flags: Symbolic FontBBox: -11, -230, 987, 750 FontFile: true Font: BaseFont: CAIZON+MinionPro-Bold FontSubset: true FirstChar: 3 LastChar: 121 FontDescriptor: FontName: CAIZON+MinionPro-Bold Flags: Symbolic FontBBox: -318, -360, 1684, 917 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: BVDSLT+MinionPro-Regular FontSubset: true FirstChar: 2 LastChar: 250 FontDescriptor: FontName: BVDSLT+MinionPro-Regular Flags: Symbolic FontBBox: -289, -360, 1684, 917 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: OEZZWC+HelveticaNeueLTStd-Bd FontSubset: true FirstChar: 40 LastChar: 124 FontDescriptor: FontName: OEZZWC+HelveticaNeueLTStd-Bd Flags: Symbolic FontBBox: -166, -218, 1078, 975 FontFile: true EncodingDictionary: Differences: true XMP: sperm, sperm RNA element, RNA-seq, sperm seasonality, transcript integrity, differential gene expression pdfTeX-1.40.15 1.5 application/pdf A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes Understanding the molecular basis of cell function and ultimate phenotypes is crucial for the development of biological markers. 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