a7d505e8755b53e30fa543ff24b716b0 celrep_a2019m7v28n2p352.pdf b56a48c6e9748b1ea703808ec53caab7f7071328 celrep_a2019m7v28n2p352.pdf d032b488852687673f67ee153765ac6ffaae5e46984fb79febdcb7b50194f324 celrep_a2019m7v28n2p352.pdf Title: Three-Dimensional Genomic Structure and Cohesin Occupancy Correlate with Transcriptional Activity during Spermatogenesis Subject: CellReports, 28 (2019) 352-376. doi:10.1016/j.celrep.2019.06.037 Author: Covadonga Vara Creator: Elsevier Producer: Acrobat Distiller 8.1.0 (Windows) CreationDate: Thu Jul 4 05:36:32 2019 CEST ModDate: Thu Jul 4 12:03:36 2019 CEST Tagged: no UserProperties: no Suspects: no Form: none JavaScript: no Pages: 26 Encrypted: no Page size: 602.986 x 782.986 pts Page rot: 0 File size: 7732394 bytes Optimized: yes PDF version: 1.7 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- EIBPBD+AdvPSHEL-B Type 1C WinAnsi yes yes no 1215 0 EIBPDE+AdvPSHN-H Type 1C 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Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6121c9d6 Children: Item: Title: Introduction Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@87f383f Item: Title: Results Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4eb7f003 Children: Item: Title: Dynamic Overall Chromatin Structure Reorganization during Spermatogenesis Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@eafc191 Item: Title: Two Rounds of TAD Reorganization in Primary Spermatocytes and Sperm Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@612fc6eb Item: Title: Functional Compartment Switching during Spermatogenesis Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@1060b431 Item: Title: Differential CTCF and Cohesin Loading Correlates with Gene Expression and Chromatin Remodeling Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@612679d6 Item: Title: Sex Chromosome Silencing Is Coupled with Higher-Order Chromatin Restructuring Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@11758f2a Item: Title: Differential CTCF and Cohesin Loading in Autosomes and the X Chromosome Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@e720b71 Item: Title: Discussion Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@1b26f7b2 Item: Title: Supplemental Information Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@491cc5c9 Item: Title: Acknowledgments Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@74ad1f1f Item: Title: Author Contributions Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6a1aab78 Item: Title: Declaration of Interests Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@462d5aee Item: Title: References Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@69b0fd6f Item: Title: STAR★Methods Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@757942a1 Children: Item: Title: Key Resources Table Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4a87761d Item: Title: Lead Contact and Materials Availability Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@66d1af89 Item: Title: Experimental Model and Subject Details Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@8646db9 Children: Item: Title: Animals Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@37374a5e Item: Title: Cell lines Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4671e53b Item: Title: Method Details Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2db7a79b Children: Item: Title: Fluorescence Activated Cell Sorting (FACS) of mouse male germ cells Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6950e31 Item: Title: Fibroblast cell culture Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@b7dd107 Item: Title: In nuclei Hi-C Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@42eca56e Item: Title: Hi-C data processing, binning and normalization Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@52f759d7 Item: Title: Correlation coefficient analysis Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7cbd213e Item: Title: Averaged contact probability P(s) Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@192d3247 Item: Title: Inter-/intra-chromosome interaction ratio Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@3ecd23d9 Item: Title: Inter-subtelomeric interaction quantification Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@569cfc36 Item: Title: Sperm simulations Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@43bd930a Item: Title: A-B compartments and TAD calling Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@33723e30 Item: Title: Compartment switching Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@64f6106c Item: Title: 3D-FISH and confocal microscopy Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@553a3d88 Item: Title: Western blot analysis of CTCF and cohesins in germ cells Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7a30d1e6 Item: Title: Spermatocyte spreads and immunofluorescence analysis of CTCF and cohesins Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@5891e32e Item: Title: Stimulated emission depletion (STED) microscopy Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@cb0ed20 Item: Title: ChIP-sequencing Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@8e24743 Item: Title: ChIP-seq peak calling and annotation Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@74a10858 Item: Title: RNA-sequencing Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@23fe1d71 Item: Title: RNA profiling Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@28ac3dc3 Item: Title: Analysis of correspondence between compartments and gene expression Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@32eebfca Item: Title: Local insulation, cohesin occupancy and gene expression Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4e718207 Item: Title: X chromosome evolutionary strata and ampliconic regions Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@1d371b2d Item: Title: Quantification and Statistical Analysis Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@543c6f6d Item: Title: Data and Code Availability Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@13eb8acf Info: Title: Three-Dimensional Genomic Structure and Cohesin Occupancy Correlate with Transcriptional Activity during Spermatogenesis Author: Covadonga Vara Subject: CellReports, 28 (2019) 352-376. doi:10.1016/j.celrep.2019.06.037 Creator: Elsevier Producer: Acrobat Distiller 8.1.0 (Windows) CreationDate: Thu Jul 04 06:06:32 CEST 2019 ModDate: Thu Jul 04 12:33:36 CEST 2019 ID: 0xbdcf1c7dd1f89487d3092694a2991cfd, 0xebd4f6156ae4ef44945add988d97011e Filters: FilterPipeline: FlateDecode FilterPipeline: DCTDecode Images: Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1199 ImageHeight: 1199 BitsPerSample: 8 BitsPerSampleUnit: integer ColorSpace: ICCBased Image: NisoImageMetadata: FormatName: image/png ImageWidth: 68 ImageHeight: 68 ColorSpace: palette color BitsPerSample: 8 BitsPerSampleUnit: integer Filter: FlateDecode Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 69 ImageHeight: 68 ColorSpace: CMYK BitsPerSample: 8 BitsPerSampleUnit: integer Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 2018 ImageHeight: 1704 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Pendás Holger Heyn Paul D. Waters Marc A. Marti-Renom Aurora Ruiz-Herrera CellReports, 28 (2019) 352-376. doi:10.1016/j.celrep.2019.06.037 The Author(s) journal CellReports © 2019 The Author(s). 2211-1247 28 2 9 July 2019 2019-07-09 352-367.e9 352 367.e9 10.1016/j.celrep.2019.06.037 https://doi.org/10.1016/j.celrep.2019.06.037 2010-04-23 true 10.1016/j.celrep.2019.06.037 elsevier.com sciencedirect.com VoR 10.1016/j.celrep.2019.06.037 noindex true 2010-04-23 true sciencedirect.com elsevier.com Elsevier 2019-07-04T09:06:32+05:30 2019-07-04T15:33:36+05:30 2019-07-04T15:33:36+05:30 True Acrobat Distiller 8.1.0 (Windows) uuid:85af7f39-666f-40e2-a658-9485b29851dd uuid:2b716875-25f5-45af-bce7-28b17ba19206 http://creativecommons.org/licenses/by/4.0/ Pages: Page: Label: 352 Sequence: 1 Annotations: Annotation: Subtype: Link Rect: 354, 496, 470, 506 Annotation: Subtype: Link Rect: 354, 484, 479, 494 Annotation: Subtype: Link Rect: 100, 48, 271, 56 Annotation: Subtype: Link Rect: 53, 58, 69, 74 Page: Label: 353 Sequence: 2 Annotations: 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