e6174b4f0dcf492b0e1632cf1a487d61 pmc_31267011.pdf d485d6faccbfd8b91202de90238b38065b7fba99 pmc_31267011.pdf baadadea0e88c026911b08c0366eb3c49eeea5391f1b3827e714097636392d44 pmc_31267011.pdf Title: Compensated pathogenic variants in coagulation factors VIII and IX present complex mapping between molecular impact and hemophilia severity Subject: Scientific Reports, doi:10.1038/s41598-019-45916-3 Keywords: Author: amp#x000D2;scar Maramp#x000ED;n Creator: Springer Producer: iText® 5.3.5 ©2000-2012 1T3XT BVBA (AGPL-version) CreationDate: Tue Jun 25 23:35:55 2019 CEST ModDate: Wed Jun 26 12:34:22 2019 CEST Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 11 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 2137916 bytes Optimized: no PDF version: 1.4 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- PTUZWU+Corbel-Bold CID TrueType Identity-H yes yes yes 257 0 JWOHQG+TimesNewRomanPSMT Type 1C WinAnsi yes yes yes 533 0 MinionPro-Regular Type 1C Custom yes no yes 57 0 CLOWGN+Corbel-Bold2 Type 1C WinAnsi yes yes yes 58 0 MinionPro-It Type 1C Custom yes no yes 60 0 DRCNJU+Corbel2 Type 1C WinAnsi yes yes yes 61 0 KTLAEE+Corbel CID TrueType Identity-H yes yes yes 62 0 MyriadPro-It Type 1C WinAnsi yes no yes 63 0 DRCNJU+Corbel2 Type 1C WinAnsi yes yes yes 448 0 EuclidSymbol Type 1C Custom yes no yes 56 0 MinionPro-Bold Type 1C WinAnsi yes no yes 59 0 YZOZSC+STIXGeneral-Regular Type 1C Custom yes yes yes 111 0 Jhove (Rel. 1.22.1, 2019-04-17) Date: 2020-08-10 12:38:43 CEST RepresentationInformation: pmc_31267011.pdf ReportingModule: PDF-hul, Rel. 1.12.1 (2019-04-17) LastModified: 2020-03-16 03:44:16 CET Size: 2137916 Format: PDF Version: 1.4 Status: Well-Formed, but not valid SignatureMatches: PDF-hul ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation shown in :30' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation shown in:33' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation shown i:62' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation shown :63' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation shown:64' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relative solven:72' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: Table 1. Summary of the results of the statistical tests corresponding to the comparisons shown in the different figures.:73' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: Table 1. Summary of the results of the statistical tests corresponding to the comparisons shown in the different figures.:74' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relative solve:75' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relat:90' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation s:91' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation sho:77' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation sh:78' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relative sol:80' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relative so:81' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relative :83' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relative:84' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), relativ:85' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 3. The molecular impact of CPDs and clinical severity. For FVIII, we plotted the value distribution of three properties (BLOSUM62 matrix elements, Shannon entropy, and ∆∆G) for the severe (black) and mild (grey) subsets. For ∆∆G, the diff:87' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 3. The molecular impact of CPDs and clinical severity. For FVIII, we plotted the value distribution of three properties (BLOSUM62 matrix elements, Shannon entropy, and ∆∆G) for the severe (black) and mild (grey) subsets. For ∆∆G, the dif:88' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 3. The molecular impact of CPDs and clinical severity. For FVIII, we plotted the value distribution of three properties (BLOSUM62 matrix elements, Shannon entropy, and ∆∆G) for the severe (black) and mild (grey) subsets. For ∆∆G, the d:93' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: Table 1. Summary of the results of the statistical tests corresponding to the comparisons shown in the different figures.:94' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 3. The molecular impact of CPDs and clinical severity. For FVIII, we plotted the value distribution of three properties (BLOSUM62 matrix elements, Shannon entropy, and ∆∆G) for the severe (black) and mild (grey) subsets. For ∆∆G, the :95' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 3. The molecular impact of CPDs and clinical severity. For FVIII, we plotted the value distribution of three properties (BLOSUM62 matrix elements, Shannon entropy, and ∆∆G) for the severe (black) and mild (grey) subsets. For ∆∆G, th:97' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: 9. Barešić, A., Hopcroft, L. E. M., Rogers, H. H., Hurst, J. M. & Martin, A. C. R. Compensated Pathogenic Deviations: Analysis of Structural Effects. J. Mol. Biol. 396, 19–30 (2010). :99' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: Table 1. Summary of the results of the statistical tests corresponding to the comparisons shown in the different figures.:100' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 4. Variability in the genetic background of FVIII and FIX. This figure shows four concrete aspects of how the sequence variants from the 1000 Genomes project are distributed across hemostasis proteins (i.e. the genetic background of FVIII:106' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 4. Variability in the genetic background of FVIII and FIX. This figure shows four concrete aspects of how the sequence variants from the 1000 Genomes project are distributed across hemostasis proteins (i.e. the genetic background of FVII:107' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 4. Variability in the genetic background of FVIII and FIX. This figure shows four concrete aspects of how the sequence variants from the 1000 Genomes project are distributed across hemostasis proteins (i.e. the genetic background of FV:109' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 5. Pathogenic load of hemostasis proteins. (A) Distribution of the number of neutral (blue) and pathogenic (red) variants per individual in the 1000 Genomes population. (B) Scatterplot showing the different combinations of neutral and:113' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 5. Pathogenic load of hemostasis proteins. (A) Distribution of the number of neutral (blue) and pathogenic (red) variants per individual in the 1000 Genomes population. (B) Scatterplot showing the different combinations of neutral an:114' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: 11. Ferrer-Costa, C., Orozco, M. & de la Cruz, X. Characterization of Compensated Mutations in Terms of Structural and Physico-Chemical Properties. J. Mol. Biol. 365, 249–256 (2007). :118' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), rela:124' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: 3. DePristo, M. A., Weinreich, D. M. & Hartl, D. L. Missense meanderings in sequence space: a biophysical view of protein evolution. Nat. Rev. Genet. 6, 678–687 (2005). :129' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), rel:130' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 3. The molecular impact of CPDs and clinical severity. For FVIII, we plotted the value distribution of three properties (BLOSUM62 matrix elements, Shannon entropy, and ∆∆G) for the severe (black) and mild (grey) subsets. For ∆∆G, t:131' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 4. Variability in the genetic background of FVIII and FIX. This figure shows four concrete aspects of how the sequence variants from the 1000 Genomes project are distributed across hemostasis proteins (i.e. the genetic background of F:132' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 3. The molecular impact of CPDs and clinical severity. For FVIII, we plotted the value distribution of three properties (BLOSUM62 matrix elements, Shannon entropy, and ∆∆G) for the severe (black) and mild (grey) subsets. For ∆∆G, :134' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 5. Pathogenic load of hemostasis proteins. (A) Distribution of the number of neutral (blue) and pathogenic (red) variants per individual in the 1000 Genomes population. (B) Scatterplot showing the different combinations of neutral :151' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 4. Variability in the genetic background of FVIII and FIX. This figure shows four concrete aspects of how the sequence variants from the 1000 Genomes project are distributed across hemostasis proteins (i.e. the genetic background of:152' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 5. Pathogenic load of hemostasis proteins. (A) Distribution of the number of neutral (blue) and pathogenic (red) variants per individual in the 1000 Genomes population. (B) Scatterplot showing the different combinations of neutral:153' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 6. Differences in the background of specific variants between FVIII and FIX. The genetic background of a given variant can vary between individuals. Here, we focus on variants of FVIII and FIX and define background as the number of accomp:154' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation :167' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 2. Differences between CPDs and noCPDs. For mutations of the two coagulation factors in our dataset, FVIII (top) and FIX (bottom), we computed the values of four properties: ∆∆G (change in protein stability upon mutation), re:168' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutation:174' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd:Figure 1. Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. (A) Illustration of the concept of CPDs: a mutation that is pathogenic in humans but neutral in other species. The mutatio:176' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: 3. DePristo, M. A., Weinreich, D. M. & Hartl, D. L. Missense meanderings in sequence space: a biophysical view of protein evolution. Nat. Rev. Genet. 6, 678–687 (2005). :178' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: 8. Xu, J. & Zhang, J. Why human disease-associated residues appear as the wild-type in other species: Genome-scale structural evidence for the compensation hypothesis. Mol. Biol. Evol. 31, 1787–1792 (2014). :180' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: 11. Ferrer-Costa, C., Orozco, M. & de la Cruz, X. Characterization of Compensated Mutations in Terms of Structural and Physico-Chemical Properties. J. Mol. Biol. 365, 249–256 (2007). :187' cannot be found Offset: 1588040 ID: PDF-HUL-122 ErrorMessage: edu.harvard.hul.ois.jhove.module.pdf.PdfInvalidException: Invalid indirect destination - referenced object 'SpringerNature_SciRep_45916.indd: 19. Pavlova, A. & Oldenburg, J. Defining severity of hemophilia: More than factor levels. Semin. Thromb. Hemost. 39, 702–710 (2013). :193' cannot be found Offset: 1588040 MIMEtype: application/pdf PDFMetadata: Objects: 615 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: false NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: SinglePage PageMode: UseOutlines Language: EN Outlines: Item: Title: Compensated pathogenic variants in coagulation factors VIII and IX present complex mapping between molecular impact and hem ... Children: Item: Title: Results Children: Item: Title: CPDs in FVIII and FIX can be associated with either mild or severe forms of hemophilia. Item: Title: CPDs in FVIII and FIX tend to be mild at the molecular level. Item: Title: The molecular impact of CPDs in FVIII (and FIX) is not strongly related to disease severity. Item: Title: Genetic variability in hemostasis proteins. Item: Title: Discussion Item: Title: Materials and Methods Children: Item: Title: CPD dataset. Item: Title: Characterization of mutations in terms of molecular properties. Item: Title: Multiple sequence alignments. Item: Title: Hemostasis proteins. Item: Title: Variants in the 1000 Genomes project. Item: Title: Acknowledgements Item: Title: Figure 1 Compensated pathogenic deviations (CPDs): definition and distribution relative to disease severity. Item: Title: Figure 2 Differences between CPDs and noCPDs. Item: Title: Figure 3 The molecular impact of CPDs and clinical severity. Item: Title: Figure 4 Variability in the genetic background of FVIII and FIX. Item: Title: Figure 5 Pathogenic load of hemostasis proteins. Item: Title: Figure 6 Differences in the background of specific variants between FVIII and FIX. Item: Title: Table 1 Summary of the results of the statistical tests corresponding to the comparisons shown in the different figures. Info: Title: Compensated pathogenic variants in coagulation factors VIII and IX present complex mapping between molecular impact and hemophilia severity Author: amp#x000D2;scar Maramp#x000ED;n Subject: Scientific Reports, doi:10.1038/s41598-019-45916-3 Keywords: Creator: Springer Producer: iText® 5.3.5 ©2000-2012 1T3XT BVBA (AGPL-version) CreationDate: Wed Jun 26 00:05:55 CEST 2019 ModDate: Wed Jun 26 12:34:22 CEST 2019 ID: 0x59a75a7edda3c607ea56fb2c47ab7b60, 0x0441b9e89f42ce8a841519888dac26e1 Filters: FilterPipeline: FlateDecode FilterPipeline: DCTDecode Images: Image: NisoImageMetadata: FormatName: image/png ImageWidth: 1100 ImageHeight: 90 ColorSpace: black is zero BitsPerSample: 1 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1650 ImageHeight: 1158 BitsPerSample: 8 BitsPerSampleUnit: integer Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: 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Supplement: 0 FontDescriptor: FontName: KTLAEE+Corbel Flags: Symbolic FontBBox: -553, -239, 1110, 952 FontFile2: true Font: BaseFont: PTUZWU+Corbel-Bold CIDSystemInfo: Registry: Adobe Registry: Identity Supplement: 0 FontDescriptor: FontName: PTUZWU+Corbel-Bold Flags: Symbolic FontBBox: -556, -239, 1155, 952 FontFile2: true XMP: application/pdf doi:10.1038/s41598-019-45916-3 Springer US Scientific Reports, doi:10.1038/s41598-019-45916-3 Compensated pathogenic variants in coagulation factors VIII and IX present complex mapping between molecular impact and hemophilia severity amp#x000D2;scar Maramp#x000ED;n Josu Aguirre Xavier de la Cruz 10.1038/s41598-019-45916-3 http://dx.doi.org/10.1038/s41598-019-45916-3 journal Scientific Reports © 2019, The Author(s) 2045-2322 10.1038/s41598-019-45916-3 Springer 2019-06-26T12:34:22+02:00 2019-06-26T03:05:55+05:30 2019-06-26T12:34:22+02:00 True iText® 5.3.5 ©2000-2012 1T3XT BVBA (AGPL-version) VoR uuid:a19728ba-004c-413e-9b88-4b280441a0e6 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OriginalDocumentID URI http://ns.adobe.com/pdfx/1.3/ pdfx pdfx internal ID of PDF/X standard GTS_PDFXVersion Text internal Conformance level of PDF/X standard GTS_PDFXConformance Text internal Company creating the PDF Company Text internal Date when document was last modified SourceModified Text internal Mirrors crossmark:DOI doi Text http://www.aiim.org/pdfa/ns/id/ pdfaid PDF/A ID Schema internal Part of PDF/A standard part Integer internal Amendment of PDF/A standard amd Text internal Conformance level of PDF/A standard conformance Text http://prismstandard.org/namespaces/basic/2.0/ prism Prism external The aggregation type specifies the unit of aggregation for a content collection. Comment PRISM recommends that the PRISM Aggregation Type Controlled Vocabulary be used to provide values for this element. Note: PRISM recommends against the use of the #other value currently allowed in this controlled vocabulary. In lieu of using #other please reach out to the PRISM group at info@prismstandard.org to request addition of your term to the Aggregation Type Controlled Vocabulary. aggregationType Text external Copyright copyright Text external The Digital Object Identifier for the article. The DOI may also be used as the dc:identifier. If used as a dc:identifier, the URI form should be captured, and the bare identifier should also be captured using prism:doi. If an alternate unique identifier is used as the required dc:identifier, then the DOI should be specified as a bare identifier within prism:doi only. If the URL associated with a DOI is to be specified, then prism:url may be used in conjunction with prism:doi in order to provide the service endpoint (i.e. the URL). doi Text external ISSN for an electronic version of the issue in which the resource occurs. Permits publishers to include a second ISSN, identifying an electronic version of the issue in which the resource occurs (therefore e(lectronic)Issn. If used, prism:eIssn MUST contain the ISSN of the electronic version. See prism:issn. issn Text external Title of the magazine, or other publication, in which a resource was/will be published. Typically this will be used to provide the name of the magazine an article appeared in as metadata for the article, along with information such as the article title, the publisher, volume, number, and cover date. Note: Publication name can be used to differentiate between a print magazine and the online version if the names are different such as “magazine” and “magazine.com.” publicationName Text external This element provides the url for an article or unit of content. The attribute platform is optionally allowed for situations in which multiple URLs must be specified. PRISM recommends that a subset of the PCV platform values, namely “mobile” and “web”, be used in conjunction with this element. NOTE: PRISM recommends against the use of the #other value allowed in the PRISM Platform controlled vocabulary. 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