290ae4e2ff57c8874b17227b09a24381 pmc_31675969.pdf c29b2ca9fe82c79add203b6c7d82d3904a63502f pmc_31675969.pdf b92f05be1a78d563027c892a6cfe3fc5e021acd86c2dcb6b25514f0c221f1b65 pmc_31675969.pdf Title: Specific growth rate governs AOX1 gene expression, affecting the production kinetics of Pichia pastoris (Komagataella phaffii) PAOX1-driven recombinant producer strains with different target gene dosage Subject: Microbial Cell Factories, https://doi.org/10.1186/s12934-019-1240-8 Keywords: AOX1 promoter,Heterologous gene dosage,Transcription analysis,Pichia pastoris,Gene expression/regulation,MIT1,Specific growth rate influence,Operational mode Author: Javier Garrigós-Martínez Creator: Springer Producer: Acrobat Distiller 10.1.8 (Windows); modified using iText® 5.3.5 ©2000-2012 1T3XT BVBA (AGPL-version) CreationDate: Tue Oct 29 10:43:38 2019 CET ModDate: Fri Nov 1 07:34:05 2019 CET Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 15 Encrypted: no Page size: 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RepresentationInformation: pmc_31675969.pdf ReportingModule: PDF-hul, Rel. 1.12.1 (2019-04-17) LastModified: 2020-03-09 03:42:38 CET Size: 1669817 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf PDFMetadata: Objects: 524 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: false NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: SinglePage PageMode: UseOutlines Language: EN Outlines: Item: Title: Specific growth rate governs AOX1 gene expression, affecting the production kinetics of Pichia pastoris (Komagataella phaffii) PAOX1-driven recombinant producer strains with different target gene dosage Children: Item: Title: Abstract Children: Item: Title: Background: Item: Title: Results: Item: Title: Conclusions: Item: Title: Background Item: Title: Results and discussion Children: Item: Title: Effect of increasing CRL1 gene dosage on culture physiological state Item: Title: Relationship between Mit1 limitation and a decreased AOX1 relative expression (RE) Item: Title: Influence of operational mode on production-related parameters Item: Title: Increasing CRL1 gene dosage boosts protein production Item: Title: Transcriptional efficiency differences between AOX1 and CRL1 genes, and their impact on Crl1 production Item: Title: Conclusions Item: Title: Materials and methods Children: Item: Title: Plasmid construction and strain generation Item: Title: Gene dosage determination Item: Title: Total RNA extraction Item: Title: Synthesis of cDNA and determination of transcriptional levels Item: Title: Chemostat cultivation Item: Title: Fed-batch cultivation Item: Title: Biomass determination as dry cell weight (DCW) Item: Title: Quantification of the carbon source and byproducts Item: Title: Off-gas analyses Item: Title: Lipolytic activity Item: Title: Process parameters determination, consistency checking and data reconciliation Children: Item: Title: Mass balance and stoichiometric equations Item: Title: Consistency checking and data reconciliation Item: Title: Acknowledgements Item: Title: References Info: Title: Specific growth rate governs AOX1 gene expression, affecting the production kinetics of Pichia pastoris (Komagataella phaffii) PAOX1-driven recombinant producer strains with different target gene dosage Author: Javier Garrigós-Martínez Subject: Microbial Cell Factories, https://doi.org/10.1186/s12934-019-1240-8 Keywords: AOX1 promoter,Heterologous gene dosage,Transcription analysis,Pichia pastoris,Gene expression/regulation,MIT1,Specific growth rate influence,Operational mode Creator: Springer Producer: Acrobat Distiller 10.1.8 (Windows); modified using iText® 5.3.5 ©2000-2012 1T3XT BVBA (AGPL-version) CreationDate: Tue Oct 29 11:13:38 CET 2019 ModDate: Fri Nov 01 07:34:05 CET 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AOX1 gene expression, affecting the production kinetics of Pichia pastoris (Komagataella phaffii) PAOX1-driven recombinant producer strains with different target gene dosage Javier Garrigós-Martínez Miguel Angel Nieto-Taype Arnau Gasset-Franch José Luis Montesinos-Seguí Xavier Garcia-Ortega Francisco Valero 10.1186/s12934-019-1240-8 2010-04-23 true springer.com springerlink.com https://doi.org/10.1186/s12934-019-1240-8 10.1186/s12934-019-1240-8 1475-2859 journal Microbial Cell Factories The Author(s) 2010-04-23 true 10.1186/s12934-019-1240-8 noindex springer.com springerlink.com VoR uuid:28130820-7eb0-49b1-a869-31ac15aded32 uuid:41fd4f35-3ede-4672-abd3-6b4f1f6f17fe default 1 converted uuid:cdd41457-097d-4dcd-a51c-88d560331ed2 converted to PDF/A-2b pdfToolbox 2019-10-29T15:14:38+05:30 2 B http://ns.adobe.com/pdfx/1.3/ pdfx Adobe Document Info PDF eXtension Schema external Mirrors crossmark:MajorVersionDate CrossmarkMajorVersionDate Text external Mirrors 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MajorVersionDate Text internal CrossmarkDomainExclusive CrossmarkDomainExclusive Text internal CrossMarkDomains CrossMarkDomains seq Text http://prismstandard.org/namespaces/basic/2.0/ prism Prism Schema external This element provides the url for an article or unit of content. The attribute platform is optionally allowed for situations in which multiple URLs must be specified. PRISM recommends that a subset of the PCV platform values, namely “mobile” and “web”, be used in conjunction with this element. NOTE: PRISM recommends against the use of the #other value allowed in the PRISM Platform controlled vocabulary. In lieu of using #other please reach out to the PRISM group at prism-wg@yahoogroups.com to request addition of your term to the Platform Controlled Vocabulary. url URI external The Digital Object Identifier for the article. The DOI may also be used as the dc:identifier. If used as a dc:identifier, the URI form should be captured, and the bare identifier should also be captured using prism:doi. If an alternate unique identifier is used as the required dc:identifier, then the DOI should be specified as a bare identifier within prism:doi only. If the URL associated with a DOI is to be specified, then prism:url may be used in conjunction with prism:doi in order to provide the service endpoint (i.e. the URL). doi Text external ISSN for an electronic version of the issue in which the resource occurs. Permits publishers to include a second ISSN, identifying an electronic version of the issue in which the resource occurs (therefore e(lectronic)Issn. If used, prism:eIssn MUST contain the ISSN of the electronic version. issn Text internal Volume number volume Text internal Issue number number Text internal Starting page startingPage Text internal Ending page endingPage Text external The aggregation type specifies the unit of aggregation for a content collection. Comment PRISM recommends that the PRISM Aggregation Type Controlled Vocabulary be used to provide values for this element. Note: PRISM recommends against the use of the #other value currently allowed in this controlled vocabulary. In lieu of using #other please reach out to the PRISM group at info@prismstandard.org to request addition of your term to the Aggregation Type Controlled Vocabulary. aggregationType Text external Title of the magazine, or other publication, in which a resource was/will be published. Typically this will be used to provide the name of the magazine an article appeared in as metadata for the article, along with information such as the article title, the publisher, volume, number, and cover date. Note: Publication name can be used to differentiate between a print magazine and the online version if the names are different such as “magazine” and “magazine.com.” publicationName Text external Copyright copyright Text http://ns.adobe.com/pdf/1.3/ pdf Adobe PDF Schema internal A name object indicating whether the document has been modified to include trapping information Trapped Text http://ns.adobe.com/xap/1.0/mm/ xmpMM XMP Media Management Schema internal UUID based identifier for specific incarnation of a document InstanceID URI internal The common identifier for all versions and renditions of a document. DocumentID URI internal The common identifier for all versions and renditions of a document. OriginalDocumentID URI http://www.aiim.org/pdfa/ns/id/ pdfaid PDF/A ID Schema internal Part of PDF/A standard part Integer internal Amendment of PDF/A standard amd Text internal Conformance level of PDF/A standard conformance Text http://www.niso.org/schemas/jav/1.0/ jav NISO external Values for Journal Article Version are one of the following: AO = Author’s Original SMUR = Submitted Manuscript Under Review AM = Accepted Manuscript P = Proof VoR = Version of Record CVoR = Corrected Version of Record EVoR = Enhanced Version of Record journal_article_version Closed Choice of Text Pages: Page: Sequence: 1 Annotations: Annotation: Subtype: Link Rect: 182, 80, 307, 72 Flags: Print AppearanceDictionary: true Annotation: Subtype: Link Rect: 87, 178, 92, 166 Flags: Print AppearanceDictionary: true Destination: 318 Annotation: Subtype: Link Rect: 98, 178, 103, 166 Flags: Print AppearanceDictionary: true Destination: 318 Annotation: Subtype: Link Rect: 343, 203, 348, 190 Flags: Print 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