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García-Cobos Creator: LaTeX with hyperref package Producer: pdfTeX-1.40.15 CreationDate: Wed Jan 29 16:46:17 2020 CET ModDate: Wed Jan 29 16:47:23 2020 CET Tagged: no UserProperties: no Suspects: no Form: none JavaScript: no Pages: 15 Encrypted: no Page size: 595.276 x 779.528 pts Page rot: 0 File size: 1206853 bytes Optimized: no PDF version: 1.5 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- VGETGQ+MinionPro-Regular Type 1 Custom yes yes no 32 0 XCKBUN+HelveticaNeueLTStd-Bd Type 1 Custom yes yes no 33 0 PFEXWU+HelveticaNeueLTStd-Lt Type 1 Custom yes yes no 34 0 QMEHHB+HelveticaNeueLTStd-BdIt Type 1 Custom yes yes no 39 0 QEAXNX+HelveticaNeueLTStd-LtIt Type 1 Custom yes yes no 40 0 VVKKJA+HelveticaNeueLTStd-MdIt Type 1 Custom yes yes no 41 0 ITAPHC+MTSYN Type 1 Builtin yes yes no 42 0 PAARCL+RBLMI Type 1 Builtin yes yes no 43 0 WPUCOG+MinionPro-It Type 1 Custom yes yes no 122 0 GIVQHA+MinionPro-Bold Type 1 Custom yes yes no 132 0 ZIDKFJ+MTSYB Type 1 Builtin yes yes no 140 0 CMERJW+MTGU Type 1 Builtin yes yes no 337 0 Jhove (Rel. 1.22.1, 2019-04-17) Date: 2023-11-09 02:36:01 CET RepresentationInformation: 284161.pdf ReportingModule: PDF-hul, Rel. 1.12.1 (2019-04-17) LastModified: 2023-11-08 19:29:04 CET Size: 1206853 Format: PDF Version: 1.5 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf PDFMetadata: Objects: 752 FreeObjects: 14 IncrementalUpdates: 2 DocumentCatalog: PageLayout: SinglePage PageMode: UseOutlines Outlines: Item: Title: Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain Children: Item: Title: Introduction Item: Title: Materials and Methods Children: Item: Title: Sample Collection Item: Title: WGS Item: Title: Core-Genome and Whole-Genome MLST (cgMLST, wgMLST), Ridom SeqSphere+ Schemes Item: Title: cgMLST, BIGSdb-Kp Scheme Item: Title: Core-Genome SNP Analysis Item: Title: Antimicrobial Resistance Genes and Plasmid Analysis Item: Title: Results Children: Item: Title: cgMLST and wgMLST Schemes From Ridom SeqSphere+ Item: Title: Analysis of Isolates Using the BIGSdb-Kp cgMLST Scheme Item: Title: Core-Genome SNP Analysis Item: Title: Antimicrobial Resistance Genes From WGS Data Compared to PCR and Phenotypic Results Item: Title: Plasmid Analysis Item: Title: Nucleotide Sequence Accession Numbers Item: Title: Discussion Item: Title: Conclusion Item: Title: Data Availability Statement Item: Title: Author Contributions Item: Title: Funding Item: Title: Acknowledgments Item: Title: Supplementary Material Item: Title: References Info: Title: Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain Author: Elisenda Miro and S. García-Cobos Subject: Whole-genome sequencing (WGS)-based typing methods have emerged as promising and highly discriminative epidemiological tools. Keywords: K. pneumoniae, OXA-48, cgMLST, wgMLST, WGS, molecular epidemiology Creator: LaTeX with hyperref package Producer: pdfTeX-1.40.15 CreationDate: Wed Jan 29 17:16:17 CET 2020 ModDate: Wed Jan 29 17:17:23 CET 2020 ID: 0x556db3df9cb574f1ce9f9a9bc88adeac, 0x4ca6caa25e63e04da1d299903ff5d490 Filters: FilterPipeline: FlateDecode Fonts: Type1: Font: BaseFont: VGETGQ+MinionPro-Regular FontSubset: true FirstChar: 2 LastChar: 252 FontDescriptor: FontName: VGETGQ+MinionPro-Regular Flags: Symbolic FontBBox: -289, -360, 1684, 917 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: XCKBUN+HelveticaNeueLTStd-Bd FontSubset: true FirstChar: 2 LastChar: 150 FontDescriptor: FontName: XCKBUN+HelveticaNeueLTStd-Bd Flags: Symbolic FontBBox: -166, -218, 1078, 975 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: CMERJW+MTGU FontSubset: true FirstChar: 98 LastChar: 98 FontDescriptor: FontName: CMERJW+MTGU Flags: Symbolic FontBBox: 25, -213, 839, 683 FontFile: true Font: BaseFont: PFEXWU+HelveticaNeueLTStd-Lt FontSubset: true FirstChar: 2 LastChar: 150 FontDescriptor: FontName: PFEXWU+HelveticaNeueLTStd-Lt Flags: Symbolic FontBBox: -166, -214, 1050, 967 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: GIVQHA+MinionPro-Bold FontSubset: true FirstChar: 3 LastChar: 121 FontDescriptor: FontName: GIVQHA+MinionPro-Bold Flags: Symbolic FontBBox: -318, -360, 1684, 917 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: QMEHHB+HelveticaNeueLTStd-BdIt FontSubset: true FirstChar: 42 LastChar: 121 FontDescriptor: FontName: QMEHHB+HelveticaNeueLTStd-BdIt Flags: Symbolic FontBBox: -166, -218, 1129, 975 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: QEAXNX+HelveticaNeueLTStd-LtIt FontSubset: true FirstChar: 2 LastChar: 252 FontDescriptor: FontName: QEAXNX+HelveticaNeueLTStd-LtIt Flags: Symbolic FontBBox: -165, -214, 1099, 951 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: VVKKJA+HelveticaNeueLTStd-MdIt FontSubset: true FirstChar: 42 LastChar: 237 FontDescriptor: FontName: VVKKJA+HelveticaNeueLTStd-MdIt Flags: Symbolic FontBBox: -165, -218, 1125, 947 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: ITAPHC+MTSYN FontSubset: true FirstChar: 2 LastChar: 67 FontDescriptor: FontName: ITAPHC+MTSYN Flags: Symbolic FontBBox: 0, -954, 1043, 900 FontFile: true Font: BaseFont: WPUCOG+MinionPro-It FontSubset: true FirstChar: 40 LastChar: 237 FontDescriptor: FontName: WPUCOG+MinionPro-It Flags: Symbolic FontBBox: -201, -360, 1684, 919 FontFile: true EncodingDictionary: Differences: true Font: BaseFont: PAARCL+RBLMI FontSubset: true FirstChar: 60 LastChar: 60 FontDescriptor: FontName: PAARCL+RBLMI Flags: Symbolic FontBBox: -11, -230, 987, 750 FontFile: true Font: BaseFont: ZIDKFJ+MTSYB FontSubset: true FirstChar: 14 LastChar: 67 FontDescriptor: FontName: ZIDKFJ+MTSYB Flags: Symbolic FontBBox: -16, -935, 1043, 896 FontFile: true XMP: K. pneumoniae, OXA-48, cgMLST, wgMLST, WGS, molecular epidemiology pdfTeX-1.40.15 1.5 application/pdf fmicb-10-02961.tex Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain Whole-genome sequencing (WGS)-based typing methods have emerged as promising and highly discriminative epidemiological tools. Elisenda Miro and S. 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Annotation: Subtype: Link Rect: 136, 265, 223, 273 Annotation: Subtype: Link Rect: 91, 237, 198, 245 Annotation: Subtype: Link Rect: 138, 207, 247, 217 Annotation: Subtype: Link Rect: 204, 179, 293, 188 Annotation: Subtype: Link Rect: 53, 169, 76, 179 Annotation: Subtype: Link Rect: 156, 141, 272, 150 Annotation: Subtype: Link Rect: 53, 113, 151, 122 Annotation: Subtype: Link Rect: 268, 94, 293, 103 Annotation: Subtype: Link Rect: 53, 86, 138, 94 Annotation: Subtype: Link Rect: 510, 444, 551, 453 Annotation: Subtype: Link Rect: 312, 434, 355, 443 Annotation: Subtype: Link Rect: 312, 397, 404, 406 Annotation: Subtype: Link Rect: 440, 369, 525, 377 Annotation: Subtype: Link Rect: 537, 340, 551, 349 Annotation: Subtype: Link Rect: 312, 332, 378, 339 Annotation: Subtype: Link Rect: 481, 292, 551, 302 Annotation: Subtype: Link Rect: 312, 285, 331, 292 Annotation: Subtype: Link Rect: 346, 254, 485, 264 Annotation: Subtype: Link Rect: 470, 226, 549, 235 Annotation: Subtype: Link Rect: 429, 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375 Annotation: Subtype: Link Rect: 478, 687, 551, 697 Annotation: Subtype: Link Rect: 312, 680, 371, 687 Annotation: Subtype: Link Rect: 438, 650, 511, 659 Annotation: Subtype: Link Rect: 373, 621, 479, 631 Annotation: Subtype: Link Rect: 509, 593, 551, 602 Annotation: Subtype: Link Rect: 312, 585, 367, 593 Annotation: Subtype: Link Rect: 335, 547, 429, 555 Annotation: Subtype: Link Rect: 496, 508, 551, 517 Annotation: Subtype: Link Rect: 312, 500, 332, 507 Annotation: Subtype: Link Rect: 508, 470, 551, 479 Annotation: Subtype: Link Rect: 312, 460, 379, 470 Annotation: Subtype: Link Rect: 339, 366, 366, 375 Annotation: Subtype: Link Rect: 366, 366, 398, 375 Annotation: Subtype: Link Rect: 398, 366, 434, 375 Annotation: Subtype: Link Rect: 434, 366, 457, 375 Annotation: Subtype: Link Rect: 458, 366, 485, 375 Annotation: Subtype: Link Rect: 43, 29, 119, 38 Annotation: Subtype: Link Rect: 122, 29, 182, 38 Annotation: Subtype: Link Rect: 429, 29, 551, 38 Checksum: de3d397d Type: CRC32 Checksum: 3d88e8d66508369e96552d8cec9009d4 Type: MD5 Checksum: 918e07c991772b4e58839b0cb31456c6085d7ba4 Type: SHA-1