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Title:           Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply
Subject:         Journal of Animal Science and Biotechnology, 2020, doi:10.1186/s40104-019-0412-z
Keywords:        Co-expression analysis,lincRNAs,microRNAs,Pig,Regulatory impact factor,Skeletal muscle
Author:          Emilio Mármol-Sánchez
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        Title: Background
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       Item: 
        Title: Results
        Destination: sectionASec2
       Item: 
        Title: Conclusions
        Destination: sectionASec3
     Item: 
      Title: Background
      Destination: sectionSec1
     Item: 
      Title: Materials and methods
      Destination: sectionSec2
      Children: 
       Item: 
        Title: Animal material and phenotypic recording
        Destination: sectionSec3
       Item: 
        Title: RNA isolation, library preparation and sequencing of small RNAs
        Destination: sectionSec4
       Item: 
        Title: Quality assessment, mapping and count estimation
        Destination: sectionSec5
       Item: 
        Title: Differential expression and differential dispersion estimates
        Destination: sectionSec6
       Item: 
        Title: Gene Ontology and pathway enrichment analysis
        Destination: sectionSec7
       Item: 
        Title: Building of co-expression networks
        Destination: sectionSec8
       Item: 
        Title: Association between muscle phenotypes and weighted gene co-expression networks
        Destination: sectionSec9
     Item: 
      Title: Results
      Destination: sectionSec10
      Children: 
       Item: 
        Title: Comparing the expression patterns of coding and non-coding RNAs expressed in the porcine skeletal muscle
        Destination: sectionSec11
       Item: 
        Title: Identification of differentially expressed and dispersed genes
        Destination: sectionSec12
       Item: 
        Title: Functional annotation and pathway enrichment of differentially expressed genes
        Destination: sectionSec13
       Item: 
        Title: Construction of co-expression networks and measurement of regulatory impact factors
        Destination: sectionSec14
       Item: 
        Title: Relationship between weighted gene co-expression modules and meat quality and muscle fatty acids composition traits
        Destination: sectionSec15
     Item: 
      Title: Discussion
      Destination: sectionSec16
      Children: 
       Item: 
        Title: Coding and non-coding RNAs show highly divergent patterns of expression in the porcine muscle
        Destination: sectionSec17
       Item: 
        Title: Differentially expressed and dispersed miRNAs are related with the regulation of key metabolic processes in the skeletal muscle
        Destination: sectionSec18
       Item: 
        Title: Relevant miRNA-to-mRNA regulatory interactions in response to nutrient supply
        Destination: sectionSec19
       Item: 
        Title: mRNA-to-mRNA hub genes reveal glucose and lipid metabolism changes induced by food intake
        Destination: sectionSec20
       Item: 
        Title: Weighted co-expression analyses revealed hub genes related with lipids metabolism regulation
        Destination: sectionSec21
     Item: 
      Title: Conclusions
      Destination: sectionSec22
     Item: 
      Title: Supplementary information
      Destination: sectionSec23
     Item: 
      Title: Abbreviations
      Destination: sectionabr1
     Item: 
      Title: Acknowledgements
      Destination: section1
     Item: 
      Title: Author’s contributions
      Destination: section2
     Item: 
      Title: Funding
      Destination: section3
     Item: 
      Title: Availability of data and materials
      Destination: section4
     Item: 
      Title: Ethics approval
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     Item: 
      Title: Consent for publication
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     Item: 
      Title: Competing interests
      Destination: sectionFPar3
     Item: 
      Title: Author details
      Destination: section5
     Item: 
      Title: References
      Destination: sectionBib1
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    Subject: Journal of Animal Science and Biotechnology, 2020, doi:10.1186/s40104-019-0412-z
    Keywords: Co-expression analysis,lincRNAs,microRNAs,Pig,Regulatory impact factor,Skeletal muscle
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                           <pdfaProperty:valueType>Bag SeriesEditorInformation</pdfaProperty:valueType>
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                                    <pdfaField:description>Gives the name of an author.</pdfaField:description>
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                           <pdfaType:description>Specifies the types of editor information: name and ORCID of an editor.</pdfaType:description>
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                                 <rdf:li rdf:parseType="Resource">
                                    <pdfaField:name>name</pdfaField:name>
                                    <pdfaField:valueType>Text</pdfaField:valueType>
                                    <pdfaField:description>Gives the name of an editor.</pdfaField:description>
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                                    <pdfaField:valueType>URI</pdfaField:valueType>
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                                    <pdfaField:valueType>Text</pdfaField:valueType>
                                    <pdfaField:description>Gives the name of a series editor.</pdfaField:description>
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                  <pdfaSchema:schema>Adobe PDF Schema</pdfaSchema:schema>
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                  <pdfaSchema:schema>PDF/A ID Schema</pdfaSchema:schema>
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                        <rdf:li rdf:parseType="Resource">
                           <pdfaProperty:category>internal</pdfaProperty:category>
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                        <rdf:li rdf:parseType="Resource">
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                           <pdfaProperty:category>internal</pdfaProperty:category>
                           <pdfaProperty:description>Conformance level of PDF/A standard</pdfaProperty:description>
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  Checksum: 31b190f8
   Type: CRC32
  Checksum: 80c67cba234536334a713fc5f4c0c9e8
   Type: MD5
  Checksum: f32f09304ccbc2919b9c40bb2c0933b2573332ee
   Type: SHA-1
  Checksum: ec822d1c008b364c0aee377d01402859b8eabaa11e040f37353d4538cb4a4a16
   Type: SHA-256