ae94d82037a29b43035970f43441755a pmc_32555447.pdf 99a94f6e7b41b588ea1abd16d79506713939e2c9 pmc_32555447.pdf a7d3f36cbd313fa03e02719fbb295ded14ec51e0f91dcda78bb620956cdc2382 pmc_32555447.pdf Title: Identification of eQTLs associated with lipid metabolism in Longissimus dorsi muscle of pigs with different genetic backgrounds Subject: Scientific Reports, doi:10.1038/s41598-020-67015-4 Keywords: Author: Lourdes Criado-Mesas Creator: Springer Producer: iText® 5.3.5 ©2000-2012 1T3XT BVBA (SPRINGER SBM; licensed version) CreationDate: Wed Jun 10 11:21:16 2020 CEST ModDate: Thu Jun 11 16:44:45 2020 CEST Custom Metadata: yes Metadata Stream: yes Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 13 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 2309935 bytes Optimized: no PDF version: 1.4 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- TFZNWB+Corbel-Bold CID TrueType Identity-H yes yes yes 54 0 OTNLZL+ArialUnicodeMS CID TrueType Identity-H yes yes yes 465 0 PZHBNJ+Corbel-BoldItalic CID TrueType Identity-H yes yes yes 466 0 GXXYMS+Corbel-BoldItalic2 Type 1C WinAnsi yes yes yes 467 0 EuclidSymbol Type 1C Custom yes no yes 59 0 EuclidSymbol-Bold Type 1C Custom yes no yes 468 0 PJWTQY+Corbel-Bold2 Type 1C WinAnsi yes yes yes 57 0 MinionPro-Regular Type 1C Custom yes no yes 56 0 ABLGLL+Corbel2 Type 1C WinAnsi yes yes yes 60 0 ZDEHCP+Corbel CID TrueType Identity-H yes yes yes 62 0 MyriadPro-It Type 1C WinAnsi yes no yes 63 0 ABLGLL+Corbel2 Type 1C WinAnsi yes yes yes 523 0 MinionPro-It Type 1C Custom yes no yes 55 0 MinionPro-Bold Type 1C WinAnsi yes no yes 58 0 PFWZIJ+STIXGeneral-Regular Type 1C Custom yes yes yes 61 0 PFWZIJ+TimesNewRomanPSMT Type 1C WinAnsi yes yes yes 339 0 EuclidSymbol-Italic Type 1C Custom yes no yes 340 0 STIXGeneral-Italic Type 1C Custom yes no yes 341 0 Jhove (Rel. 1.28.0, 2023-05-18) Date: 2024-10-02 04:07:33 CEST RepresentationInformation: pmc_32555447.pdf ReportingModule: PDF-hul, Rel. 1.12.4 (2023-03-16) LastModified: 2023-03-31 11:46:46 CEST Size: 2309935 Format: PDF Version: 1.4 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf PDFMetadata: Objects: 585 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: false NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: SinglePage PageMode: UseOutlines Language: EN Outlines: Item: Title: Identification of eQTLs associated with lipid metabolism in Longissimus dorsi muscle of pigs with different genetic backgro ... Children: Item: Title: Results and discussion Children: Item: Title: Sex and genetic background effect on gene expression. Item: Title: Gene expression correlations. Item: Title: Genome-wide association studies for gene expression and eQTL identification. Children: Item: Title: Cis-eQTLs. Item: Title: Trans-eQTLs. Item: Title: eGWAS analysis for each backcross independently. Children: Item: Title: Cis-eQTLs. Item: Title: Hotspots identified in trans-eQTLs regions. Item: Title: Conclusions Item: Title: Material and Methods Children: Item: Title: Animal material. Item: Title: Genotyping. Item: Title: Gene expression. Item: Title: Genome-wide association analysis for gene expression. Item: Title: Gene annotation. Item: Title: Co-expression and functional analysis. Item: Title: Acknowledgements Item: Title: Figure 1 Comparison between females (F) and males (M) of mRNA expression levels of 45 lipid-related genes in animals from the 3BCs. Item: Title: Figure 2 Comparison between the three experimental backcrosses in the mRNA expression levels of 45 lipid-related genes. Item: Title: Figure 3 Gene co-expression network in 3BCs using the PCIT algorithm. Item: Title: Figure 4 PhenoGram plot representing associated gene expression regions along pig chromosomes in the 3BCs study and in each backcross individually. Item: Title: Figure 5 GWAS plot of muscle IGF2 gene expression in the 3BCs study. Item: Title: Figure 6 Plot of mRNA expression values (NQ) of IGF2 in muscle tissue according to the IGF2:g. Item: Title: Figure 7 GWAS plot of muscle ACSM5 gene expression in the 3BCs study. Item: Title: Figure 8 (A) GeneMANIA analysis between SSC2 hotspot genes. Item: Title: Figure 9 Co-expression network for genes associated with the BC1_DU trans-eQTL hotspot on SSC1 using the PCIT algorithm. Item: Title: Table 1 Significant eQTLs for the 45-muscle gene expression study in 3BCs animals. 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doi:10.1038/s41598-020-67015-4 Identification of eQTLs associated with lipid metabolism in Longissimus dorsi muscle of pigs with different genetic backgrounds Lourdes Criado-Mesas Maria Ballester Daniel Crespo-Piazuelo Anna Castellamp#x000F3; Ana I. Fernamp#x000E1;ndez Josep M. Folch 10.1038/s41598-020-67015-4 http://dx.doi.org/10.1038/s41598-020-67015-4 journal Scientific Reports © 2020, The Author(s) 2045-2322 10.1038/s41598-020-67015-4 Springer 2020-06-11T16:44:45+02:00 2020-06-10T14:51:16+05:30 2020-06-11T16:44:45+02:00 True iText® 5.3.5 ©2000-2012 1T3XT BVBA (SPRINGER SBM; licensed version) VoR uuid:f332db2e-55b0-4343-be5d-776808e07f95 uuid:ac7f3622-8f0e-402f-bd55-8cfdfc9f8196 default 1 converted uuid:4e5f0afc-f6cd-4427-a221-0f54553db06c converted to PDF/A-2b pdfToolbox 2020-06-10T14:52:38+05:30 2 B http://ns.adobe.com/xap/1.0/mm/ xmpMM XMP Media Management Schema internal UUID based identifier for specific incarnation of a document InstanceID URI internal The common identifier for all versions and renditions of a document. 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