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Destination: sectionSec1 Item: Title: Materials and methods Destination: sectionSec2 Children: Item: Title: Subjects and diet manipulation Destination: sectionSec3 Item: Title: Treadmill exercise Destination: sectionSec4 Item: Title: Sample collection Destination: sectionSec5 Item: Title: Protein and triglyceride measurements Destination: sectionSec6 Item: Title: RNA extraction and gene expression assays Destination: sectionSec7 Item: Title: Statistical analyses Destination: sectionSec8 Item: Title: Fecal DNA extraction, microbiome community sequencing and statistical analyses Destination: sectionSec9 Item: Title: Results Destination: sectionSec10 Children: Item: Title: Energy intake, body weight and composition, and WAT gene expression Destination: sectionSec11 Item: Title: Microbial species diversity and microbiome composition Destination: sectionSec12 Item: Title: Predicted microbiome function Destination: sectionSec13 Item: Title: WAT and hypothalamic gene expression Destination: sectionSec14 Item: Title: Associations between variables of interest and microbiome Destination: sectionSec15 Item: Title: Discussion Destination: sectionSec16 Item: Title: Conclusions Destination: sectionSec17 Item: Title: Supplementary information Destination: sectionSec18 Item: Title: Abbreviations Destination: sectionabr1 Item: Title: Acknowledgements Destination: section1 Item: Title: Authors’ contributions Destination: section2 Item: Title: Funding Destination: section3 Item: Title: Availability of data and materials Destination: section4 Item: Title: Ethics approval and consent to participate Destination: sectionFPar1 Item: Title: Consent for publication Destination: sectionFPar2 Item: Title: Competing interests Destination: sectionFPar3 Item: Title: Author details Destination: section5 Item: Title: References Destination: sectionBib1 Item: Title: Publisher’s Note Destination: ArtNote2 Info: Title: Treadmill exercise has minimal impact on obesogenic diet-related gut microbiome 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gene expression in rats Sarah-Jane Leigh Nadeem O. 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