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Item: Title: Samples, DNA extraction, library preparation Destination: sectionSec6 Item: Title: Target Design, Capture and Sequencing Destination: sectionSec7 Item: Title: Mapping and Variant Discovery Destination: sectionSec8 Item: Title: Quality control Destination: sectionSec9 Item: Title: Genetic distance, relatedness and heterozygosity Destination: sectionSec10 Item: Title: Association analysis Destination: sectionSec11 Item: Title: Prediction of functional consequences of the significant markers Destination: sectionSec12 Item: Title: Microbiome sequencing Destination: sectionSec13 Item: Title: Abbreviations Destination: sectionabr1 Item: Title: Supplementary Information Destination: sectionSec14 Item: Title: Acknowledgments Destination: section1 Item: Title: Research involving animals Destination: sectionFPar1 Item: Title: Authors’ contributions Destination: section2 Item: Title: Funding Destination: section3 Item: Title: Availability of data and materials Destination: section4 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