a976307382c11387eff795d56b2375e4 41598_2021_Article_83132.pdf f5fa96d9a04cefd6ad04d7a3064090de5d00c014 41598_2021_Article_83132.pdf b0a33547a77402e84163723e96c2a63141e76a603961db8fb86739609bff9fe2 41598_2021_Article_83132.pdf Title: Analysis of extracellular vesicle mRNA derived from plasma using the nCounter platform Subject: Scientific Reports, https://doi.org/10.1038/s41598-021-83132-0 Author: Jillian W. P. Bracht Creator: Springer Producer: Adobe PDF Library 15.0; modified using iText® 5.3.5 ©2000-2012 1T3XT BVBA (SPRINGER SBM; licensed version) CreationDate: Mon Feb 8 08:57:48 2021 CET ModDate: Mon Feb 8 10:16:42 2021 CET Tagged: no UserProperties: no Suspects: no Form: none JavaScript: no Pages: 12 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 4966126 bytes Optimized: no PDF version: 1.6 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- VPOIMN+Wingdings-Regular Type 1C WinAnsi yes yes yes 446 0 MinionPro-Regular Type 1C Custom yes no yes 35 0 MVFCYQ+Corbel-Bold CID TrueType Identity-H yes yes yes 37 0 Corbel2 TrueType WinAnsi yes no yes 38 0 XYYVWU+Corbel CID TrueType Identity-H yes yes yes 39 0 MinionPro-Bold Type 1C Custom yes no yes 36 0 MinionPro-It Type 1C Custom yes no yes 70 0 KDOGXD+TimesNewRomanPSMT CID TrueType Identity-H yes yes yes 229 0 TimesNewRomanPSMT2 TrueType WinAnsi yes no yes 230 0 Jhove (Rel. 1.22.1, 2019-04-17) Date: 2023-05-27 03:28:16 CEST RepresentationInformation: 41598_2021_Article_83132.pdf ReportingModule: PDF-hul, Rel. 1.12.1 (2019-04-17) LastModified: 2022-12-14 20:06:04 CET Size: 4966126 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf PDFMetadata: Objects: 517 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: false NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: SinglePage PageMode: UseOutlines Language: en-US Outlines: Item: Title: Analysis of extracellular vesicle mRNA derived from plasma using the nCounter platform Children: Item: Title: Results Children: Item: Title: Optimization of plasma EV enrichment and EV-RNA extraction methodologies. Item: Title: EV-derived mRNA analysis on nCounter and classifier development. Item: Title: Improvement of classifier performance through removal of genomic DNA. Item: Title: Discussion Item: Title: Methods Children: Item: Title: Patient samples. Item: Title: Extracellular vesicle enrichment. Item: Title: EV characterization by western blot. Item: Title: EV characterization with cryogenic electron microscopy. Item: Title: RNA extraction. Item: Title: Electrophoretic analysis of RNA. Item: Title: DNase treatment. Item: Title: Gene expression analysis using nCounter. Item: Title: Data normalization and analysis. Item: Title: Classifier algorithm development. Item: Title: Gene expression analysis using qRT-PCR. Item: Title: References Item: Title: Acknowledgements Info: Title: Analysis of extracellular vesicle mRNA derived from plasma using the nCounter platform Author: Jillian W. P. Bracht Subject: Scientific Reports, https://doi.org/10.1038/s41598-021-83132-0 Creator: Springer Producer: Adobe PDF Library 15.0; modified using iText® 5.3.5 ©2000-2012 1T3XT BVBA (SPRINGER SBM; licensed version) CreationDate: Mon Feb 08 09:27:48 CET 2021 ModDate: Mon Feb 08 10:16:42 CET 2021 ID: 0xa7ba4a69e14031252f5ef868c53a2ab6, 0x3d21056f28117d0b90d870755bdda39d Filters: FilterPipeline: FlateDecode Images: Image: NisoImageMetadata: FormatName: image/png ImageWidth: 2008 ImageHeight: 1184 ColorSpace: RGB BitsPerSample: 8 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: FormatName: image/png ImageWidth: 2008 ImageHeight: 1083 ColorSpace: black is zero BitsPerSample: 8 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: FormatName: image/png ImageWidth: 2008 ImageHeight: 1435 ColorSpace: RGB BitsPerSample: 8 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: FormatName: image/png ImageWidth: 2008 ImageHeight: 1006 ColorSpace: black is zero BitsPerSample: 8 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: FormatName: image/png ImageWidth: 2008 ImageHeight: 1073 ColorSpace: RGB BitsPerSample: 8 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: FormatName: image/png ImageWidth: 2008 ImageHeight: 1908 ColorSpace: RGB BitsPerSample: 8 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Image: NisoImageMetadata: FormatName: image/png ImageWidth: 1100 ImageHeight: 90 ColorSpace: black is zero BitsPerSample: 1 BitsPerSampleUnit: integer Filter: FlateDecode Intent: RelativeColorimetric Name: X Fonts: Type0: Font: BaseFont: MVFCYQ+Corbel-Bold Encoding: Identity-H ToUnicode: true Font: BaseFont: KDOGXD+TimesNewRomanPSMT Encoding: Identity-H ToUnicode: true Font: BaseFont: XYYVWU+Corbel Encoding: Identity-H ToUnicode: true Type1: Font: BaseFont: MinionPro-Regular FirstChar: 0 LastChar: 255 FontDescriptor: FontName: MinionPro-Regular Flags: Serif, Nonsymbolic FontBBox: -290, -360, 1684, 989 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: MinionPro-Bold FirstChar: 0 LastChar: 255 FontDescriptor: FontName: MinionPro-Bold Flags: Serif, Nonsymbolic FontBBox: -319, -360, 1684, 1024 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: MinionPro-It FirstChar: 0 LastChar: 255 FontDescriptor: FontName: MinionPro-It Flags: Serif, Nonsymbolic, Italic FontBBox: -201, -360, 1684, 1002 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: VPOIMN+Wingdings-Regular FontSubset: true FirstChar: 0 LastChar: 255 FontDescriptor: FontName: VPOIMN+Wingdings-Regular Flags: Nonsymbolic FontBBox: 0, -103, 1359, 439 FontFile3: true Encoding: WinAnsiEncoding ToUnicode: true TrueType: Font: BaseFont: Corbel2 FirstChar: 0 LastChar: 255 FontDescriptor: FontName: Corbel2 Flags: Nonsymbolic FontBBox: -553, -239, 1110, 952 FontFile2: true Encoding: WinAnsiEncoding ToUnicode: true Font: BaseFont: TimesNewRomanPSMT2 FirstChar: 32 LastChar: 121 FontDescriptor: FontName: TimesNewRomanPSMT2 Flags: Serif, Nonsymbolic FontBBox: -568, -307, 2046, 1040 FontFile2: true Encoding: WinAnsiEncoding ToUnicode: true CIDFontType2: Font: BaseFont: XYYVWU+Corbel CIDSystemInfo: Registry: Adobe Registry: Identity Supplement: 0 FontDescriptor: FontName: XYYVWU+Corbel Flags: Symbolic FontBBox: -553, -239, 1110, 952 FontFile2: true Font: BaseFont: KDOGXD+TimesNewRomanPSMT CIDSystemInfo: Registry: Adobe Registry: Identity Supplement: 0 FontDescriptor: FontName: KDOGXD+TimesNewRomanPSMT Flags: Serif, Symbolic FontBBox: -568, -307, 2046, 1040 FontFile2: true Font: BaseFont: MVFCYQ+Corbel-Bold CIDSystemInfo: Registry: Adobe Registry: Identity Supplement: 0 FontDescriptor: FontName: MVFCYQ+Corbel-Bold Flags: Symbolic FontBBox: -556, -239, 1155, 952 FontFile2: true XMP: 2021-02-08T13:27:48+05:30 Springer 2021-02-08T10:16:42+01:00 2021-02-08T10:16:42+01:00 application/pdf https://doi.org/10.1038/s41598-021-83132-0 Nature Publishing Group UK Scientific Reports, https://doi.org/10.1038/s41598-021-83132-0 Analysis of extracellular vesicle mRNA derived from plasma using the nCounter platform Jillian W. P. Bracht Ana Gimenez-Capitan Chung-Ying Huang Nicolas Potie Carlos Pedraz-Valdunciel Sarah Warren Rafael Rosell Miguel A. 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