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Title:           Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces
Subject:         BMC Genomics, 2021, doi:10.1186/s12864-021-07607-0
Keywords:        Long-read metagenomics,Gastrointestinal microbiome,Fecal microbiome,Long-reads,Nanopore,Canine microbiome,Dog microbiome,Metagenome-assembled genomes,Sutterella
Author:          Anna Cuscó
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        Title: Background
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       Item: 
        Title: Results
        Destination: sectionASec2
       Item: 
        Title: Conclusions
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     Item: 
      Title: Background
      Destination: sectionSec1
     Item: 
      Title: Material and methods
      Destination: sectionSec2
      Children: 
       Item: 
        Title: DNA extraction and long-read sequencing
        Destination: sectionSec3
       Item: 
        Title: Raw reads: pre-processing, quality control, and taxonomic analyses
        Destination: sectionSec4
       Item: 
        Title: Metagenomics assembly and polishing
        Destination: sectionSec5
       Item: 
        Title: Characterization of the high-quality MAGs
        Destination: sectionSec6
       Item: 
        Title: Functional and Pangenomics analysis of the HQ MAGs
        Destination: sectionSec7
     Item: 
      Title: Results
      Destination: sectionSec8
      Children: 
       Item: 
        Title: HMW DNA extraction for longer reads and larger contigs
        Destination: sectionSec9
       Item: 
        Title: Metagenomics assembly with different subsets followed by frameshift aware correction retrieved eight high-quality MAGs
        Destination: sectionSec10
       Item: 
        Title: High-quality MAGs of the canine fecal microbiome improved previous genome assemblies
        Destination: sectionSec11
       Item: 
        Title: Screening of previous microbiome studies revealed the first potential genome assembly for Sutterella stercoricanis
        Destination: sectionSec12
       Item: 
        Title: Long reads provide genomic context and enable capturing mobilome functions and antimicrobial-resistant genes
        Destination: sectionSec13
     Item: 
      Title: Discussion
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     Item: 
      Title: Abbreviations
      Destination: sectionabr1
     Item: 
      Title: Supplementary Information
      Destination: sectionSec15
     Item: 
      Title: Acknowledgments
      Destination: section1
     Item: 
      Title: Authors’ contributions
      Destination: section2
     Item: 
      Title: Funding
      Destination: section3
     Item: 
      Title: Availability of data and materials
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     Item: 
      Title: Declarations
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     Item: 
      Title: Ethics approval and consent to participate
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     Item: 
      Title: Consent for publication
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     Item: 
      Title: Competing interests
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     Item: 
      Title: Author details
      Destination: section6
     Item: 
      Title: References
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     Item: 
      Title: Publisher’s Note
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    Title: Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces
    Author: Anna Cuscó
    Subject: BMC Genomics, 2021, doi:10.1186/s12864-021-07607-0
    Keywords: Long-read metagenomics,Gastrointestinal microbiome,Fecal microbiome,Long-reads,Nanopore,Canine microbiome,Dog microbiome,Metagenome-assembled genomes,Sutterella
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