096aad337cfaa1316e685115677412d8 pmc_33976135.pdf dbb565084b784919214da0d34467f72812d89189 pmc_33976135.pdf 307803cd9eaa0f789fd58b0e9c3b557a83102eb5c3dda0cc3222ae09b8bf8418 pmc_33976135.pdf Title: Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections Subject: Nature Communications, doi:10.1038/s41467-021-22705-z Keywords: Author: Miguel Moreno-Molina Creator: Springer Producer: iText® 5.3.5 ©2000-2012 1T3XT BVBA (SPRINGER SBM; licensed version) CreationDate: Tue May 4 16:54:38 2021 CEST ModDate: Wed May 5 17:34:13 2021 CEST Tagged: no UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 11 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 3216012 bytes Optimized: no PDF version: 1.4 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- Arial-BoldMT Type 1C WinAnsi yes no no 615 0 CGIDLN+AdvOTf23bb480 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edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@74ad1f1f Item: Title: Patient follow-up treatment can be compromised by the polyclonal infection Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6a1aab78 Item: Title: Diversity within and around lesions reflects host microenvironment pressures Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@462d5aee Item: Title: Discussion Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@69b0fd6f Item: Title: Methods Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@757942a1 Children: Item: Title: Sampling Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4a87761d Item: Title: Culture and drug susceptibility testing Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@66d1af89 Item: Title: DNA extraction and sequencing Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@8646db9 Item: Title: Bioinformatic analysis Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@37374a5e Item: Title: Phylogenetic and population genetics analyses Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@4671e53b Item: Title: Prediction of WGS-DST profiles and comparison with culture DST Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@2db7a79b Item: Title: Identification of polyclonal infections Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@6950e31 Item: Title: Identification of polyclonal infections in single samples Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@b7dd107 Item: Title: Phylogenetic identification Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@42eca56e Item: Title: Lineage markers identification Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@52f759d7 Item: Title: Deconvolution of individual genotypes Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7cbd213e Item: Title: Identification of polyclonal infections in multiple samples Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@192d3247 Item: Title: Phylogeny manual inspection Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@3ecd23d9 Item: Title: Analysis of frequency spectra differences Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@569cfc36 Item: Title: Ethical approval Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@43bd930a Item: Title: Reporting summary Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@33723e30 Item: Title: Data availability Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@64f6106c Item: Title: Code availability Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@553a3d88 Item: Title: References Destination: edu.harvard.hul.ois.jhove.module.pdf.PdfSimpleObject@7a30d1e6 Item: Title: Acknowledgements Destination: 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BaseFont: CGIDPC+AdvOT1ef757c0+20 FontSubset: true FirstChar: 2 LastChar: 150 FontDescriptor: FontName: CGIDPC+AdvOT1ef757c0+20 Flags: Symbolic FontBBox: -135, -187, 1010, 833 FontFile3: true EncodingDictionary: Differences: true ToUnicode: true Font: BaseFont: CGIDPD+AdvOTb65e897d.B FontSubset: true FirstChar: 45 LastChar: 121 FontDescriptor: FontName: CGIDPD+AdvOTb65e897d.B Flags: Serif, Nonsymbolic FontBBox: -20, -250, 968, 854 FontFile3: true Encoding: WinAnsiEncoding XMP: application/pdf doi:10.1038/s41467-021-22705-z Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections Miguel Moreno-Molina Natalia Shubladze Iza Khurtsilava Zaza Avaliani Nino Bablishvili Manuela Torres-Puente Luis Villamayor Andrei Gabrielian Alex Rosenthal Cristina Vilaplana Sebastien Gagneux Russell R. Kempker Sergo Vashakidze Iñaki Comas Springer US Nature Communications, doi:10.1038/s41467-021-22705-z 10.1038/s41467-021-22705-z http://dx.doi.org/10.1038/s41467-021-22705-z journal Nature Communications © 2021, The Author(s) 2041-1723 10.1038/s41467-021-22705-z springer.com springerlink.com 2010-04-23 True 10.1038/s41467-021-22705-z springer.com springerlink.com Springer 2021-05-05T17:34:13+02:00 2021-05-04T20:24:38+05:30 2021-05-05T17:34:13+02:00 True iText® 5.3.5 ©2000-2012 1T3XT BVBA (SPRINGER SBM; licensed version) VoR uuid:ee8d89ba-b0cc-4157-9d1c-5b3962b7f601 uuid:725d1397-4a58-4945-aad0-b3aaa9e2c8fe default 1 converted uuid:06a13ff9-4e64-4ccc-9904-7a1d958e4b2f converted to PDF/A-2b pdfToolbox 2021-05-04T20:25:40+05:30 2 B Miguel Moreno-Molina http://orcid.org/0000-0003-0305-4445 Natalia Shubladze http://orcid.org/0000-0003-0580-9629 Alex Rosenthal http://orcid.org/0000-0003-4190-9045 Cristina Vilaplana http://orcid.org/0000-0002-2808-7270 Sebastien Gagneux http://orcid.org/0000-0001-7783-9048 Iñaki Comas http://orcid.org/0000-0001-5504-9408 http://ns.adobe.com/pdf/1.3/ pdf Adobe PDF Schema internal A name object indicating whether the document has been modified to include trapping information Trapped Text http://ns.adobe.com/pdfx/1.3/ pdfx pdfx internal ID of PDF/X standard GTS_PDFXVersion Text internal Conformance level of PDF/X standard GTS_PDFXConformance Text internal Company creating the PDF Company Text internal Date when document was last modified SourceModified Text external Mirrors crossmark:CrosMarkDomains CrossMarkDomains Seq Text internal Mirrors crossmark:DOI doi Text http://ns.adobe.com/xap/1.0/mm/ xmpMM XMP Media Management Schema internal UUID based identifier for specific incarnation of a document InstanceID URI internal The common identifier for all versions and renditions of a document. 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In lieu of using #other please reach out to the PRISM group at info@prismstandard.org to request addition of your term to the Aggregation Type Controlled Vocabulary. aggregationType Text external Copyright copyright Text external The Digital Object Identifier for the article. The DOI may also be used as the dc:identifier. If used as a dc:identifier, the URI form should be captured, and the bare identifier should also be captured using prism:doi. If an alternate unique identifier is used as the required dc:identifier, then the DOI should be specified as a bare identifier within prism:doi only. If the URL associated with a DOI is to be specified, then prism:url may be used in conjunction with prism:doi in order to provide the service endpoint (i.e. the URL). doi Text external ISSN for an electronic version of the issue in which the resource occurs. 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