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1.22.1, 2019-04-17) Date: 2022-07-14 02:33:05 CEST RepresentationInformation: pmc_9235133.pdf ReportingModule: PDF-hul, Rel. 1.12.1 (2019-04-17) LastModified: 2022-07-13 07:27:22 CEST Size: 1682947 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf PDFMetadata: Objects: 1307 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: false NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: SinglePage PageMode: UseOutlines Language: EN Outlines: Item: Title: Use of Bayes factors to evaluate the effects of host genetics, litter and cage on the rabbit cecal microbiota Children: Item: Title: Abstract Children: Item: Title: Background: Item: Title: Results: Item: Title: Conclusions: Item: Title: Background Item: Title: Methods Children: Item: Title: Animals Item: Title: Sample collection, DNA extraction and sequencing Item: Title: Bioinformatics processing of microbial traits Item: Title: Statistical models Children: Item: Title: Zero-inflated Poisson (ZIP) mixed model Item: Title: Linear mixed model (LMM) Item: Title: Criteria for comparison of models Item: Title: MCMC Bayesian implementation Item: Title: Results Children: Item: Title: Cecal microbial composition and diversity Item: Title: Adjustment of microbial traits with the LMM versus ZIP model Item: Title: Effects of the host genetics, litter and cage on the rabbit cecal microbiota Item: Title: Microbial traits under genetic control Item: Title: Microbial traits influenced by the nursing environment Item: Title: Discussion Item: Title: Conclusions Item: Title: Acknowledgements Item: Title: References Info: Title: Use of Bayes factors to evaluate the effects of host genetics, litter and cage on the rabbit cecal microbiota Author: María Velasco-Galilea 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WinAnsiEncoding Differences: true Font: BaseFont: SGFYEN+MTSY FontSubset: true FirstChar: 0 LastChar: 255 FontDescriptor: FontName: SGFYEN+MTSY Flags: Symbolic FontBBox: 0, -954, 1043, 796 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: ONQKSW+WarnockPro-Regular45 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular45 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+MathPackThirteen2 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: YQNPCC+MathPackThirteen2 Flags: Symbolic FontBBox: 0, -5, 539, 715 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular46 FontSubset: true FirstChar: 28 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular46 Flags: Symbolic FontBBox: -23, 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FontBBox: -166, -253, 1090, 950 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: ONQKSW+Frutiger-Roman FontSubset: true FirstChar: 32 LastChar: 118 FontDescriptor: FontName: ONQKSW+Frutiger-Roman Flags: Nonsymbolic FontBBox: -169, -250, 1000, 935 FontFile3: true Encoding: WinAnsiEncoding Font: BaseFont: ONQKSW+Frutiger-Bold FontSubset: true FirstChar: 32 LastChar: 83 FontDescriptor: FontName: ONQKSW+Frutiger-Bold Flags: Nonsymbolic FontBBox: -166, -250, 1000, 935 FontFile3: true Encoding: WinAnsiEncoding Font: BaseFont: ONQKSW+MTSYN27 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: ONQKSW+MTSYN27 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: DQBOUS+MyriadPro-Semibold2 FontSubset: true FirstChar: 28 LastChar: 33 FontDescriptor: FontName: DQBOUS+MyriadPro-Semibold2 Flags: Symbolic, SmallCap FontBBox: 0, -7, 537, 710 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: DQBOUS+MTSYB2 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: DQBOUS+MTSYB2 Flags: Symbolic FontBBox: 0, -133, 670, 551 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: DQBOUS+MTSYB3 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: DQBOUS+MTSYB3 Flags: Symbolic FontBBox: 0, -133, 670, 551 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: DQBOUS+MTSYB FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: DQBOUS+MTSYB Flags: Symbolic FontBBox: 0, -133, 670, 551 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: DQBOUS+MyriadPro-Regular3 FontSubset: true FirstChar: 28 LastChar: 33 FontDescriptor: FontName: DQBOUS+MyriadPro-Regular3 Flags: Symbolic, 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Flags: Symbolic FontBBox: 0, -2959, 1387, 50 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular21 FontSubset: true FirstChar: 27 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular21 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ISQXMI+WarnockPro-Bold6 FontSubset: true FirstChar: 26 LastChar: 33 FontDescriptor: FontName: ISQXMI+WarnockPro-Bold6 Flags: Symbolic, AllCap FontBBox: 0, -19, 722, 700 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ISQXMI+MTGUB FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: ISQXMI+MTGUB Flags: Symbolic FontBBox: 0, -201, 460, 699 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+WarnockPro-Bold5 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: YQNPCC+WarnockPro-Bold5 Flags: Symbolic, SmallCap FontBBox: -6, -232, 722, 700 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular18 FontSubset: true FirstChar: 27 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular18 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+CMEX105 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: YQNPCC+CMEX105 Flags: Symbolic FontBBox: 0, -2959, 1387, 50 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular24 FontSubset: true FirstChar: 28 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular24 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: 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WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+CMEX106 FontSubset: true FirstChar: 23 LastChar: 33 FontDescriptor: FontName: YQNPCC+CMEX106 Flags: Symbolic FontBBox: 0, -2959, 1387, 50 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ISQXMI+WarnockPro-Regular20 FontSubset: true FirstChar: 24 LastChar: 33 FontDescriptor: FontName: ISQXMI+WarnockPro-Regular20 Flags: Symbolic, SmallCap FontBBox: -3, -245, 542, 700 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+MTSYN10 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+MTSYN10 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: YQNPCC+CMEX104 FontSubset: true FirstChar: 25 LastChar: 33 FontDescriptor: FontName: YQNPCC+CMEX104 Flags: Symbolic FontBBox: 0, -2959, 1387, 50 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular17 FontSubset: true FirstChar: 24 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular17 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+MTSYN22 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+MTSYN22 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: ONQKSW+WarnockPro-Regular13 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular13 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular41 FontSubset: true FirstChar: 21 LastChar: 33 FontDescriptor: FontName: 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FontDescriptor: FontName: ONQKSW+MTSYN21 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: ONQKSW+WarnockPro-Regular16 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular16 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular29 FontSubset: true FirstChar: 29 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular29 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular15 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular15 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+MTSYN20 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: ONQKSW+MTSYN20 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: ONQKSW+MTSYN8 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: ONQKSW+MTSYN8 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: YQNPCC+WarnockPro-Bold12 FontSubset: true FirstChar: 29 LastChar: 33 FontDescriptor: FontName: YQNPCC+WarnockPro-Bold12 Flags: Symbolic, SmallCap FontBBox: -6, -232, 722, 700 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+MTSYN6 FontSubset: true FirstChar: 23 LastChar: 33 FontDescriptor: FontName: ONQKSW+MTSYN6 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: ONQKSW+WarnockPro-Regular42 FontSubset: true FirstChar: 24 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular42 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ISQXMI+MathPackEleven2 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: ISQXMI+MathPackEleven2 Flags: Symbolic FontBBox: 0, -6, 527, 697 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+CMEX109 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: YQNPCC+CMEX109 Flags: Symbolic FontBBox: 0, -2959, 1387, 50 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ISQXMI+WarnockPro-Regular11 FontSubset: true FirstChar: 22 LastChar: 33 FontDescriptor: FontName: ISQXMI+WarnockPro-Regular11 Flags: Symbolic, SmallCap FontBBox: -3, -245, 542, 700 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular43 FontSubset: true FirstChar: 18 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular43 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+WarnockPro-Bold4 FontSubset: true FirstChar: 31 LastChar: 33 FontDescriptor: FontName: YQNPCC+WarnockPro-Bold4 Flags: Symbolic, SmallCap FontBBox: -6, -232, 722, 700 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+MTSYN19 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+MTSYN19 Flags: Symbolic FontBBox: 0, -204, 724, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: YQNPCC+CMEX103 FontSubset: true FirstChar: 21 LastChar: 33 FontDescriptor: FontName: YQNPCC+CMEX103 Flags: Symbolic FontBBox: 0, -2959, 1387, 50 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+CMEX1010 FontSubset: true FirstChar: 29 LastChar: 33 FontDescriptor: FontName: YQNPCC+CMEX1010 Flags: Symbolic FontBBox: 0, -2959, 1387, 50 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+MTMI4 FontSubset: true FirstChar: 28 LastChar: 33 FontDescriptor: FontName: YQNPCC+MTMI4 Flags: Symbolic, AllCap FontBBox: 0, -207, 683, 676 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular38 FontSubset: true FirstChar: 27 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular38 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: DQBOUS+MyriadPro-Semibold3 FontSubset: true FirstChar: 28 LastChar: 33 FontDescriptor: FontName: DQBOUS+MyriadPro-Semibold3 Flags: Symbolic, SmallCap FontBBox: 0, -7, 537, 710 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular14 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular14 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular44 FontSubset: true FirstChar: 26 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular44 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: YQNPCC+WarnockPro-Bold2 FontSubset: true FirstChar: 29 LastChar: 33 FontDescriptor: FontName: YQNPCC+WarnockPro-Bold2 Flags: Symbolic, SmallCap FontBBox: -6, -232, 722, 700 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: SPOFWO+MTSYN23 FontSubset: true FirstChar: 29 LastChar: 33 FontDescriptor: FontName: SPOFWO+MTSYN23 Flags: Symbolic, AllCap FontBBox: 0, -181, 724, 668 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular27 FontSubset: true FirstChar: 20 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular27 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular40 FontSubset: true FirstChar: 20 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular40 Flags: Symbolic FontBBox: -23, -245, 910, 712 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true Font: BaseFont: ONQKSW+WarnockPro-Regular28 FontSubset: true FirstChar: 30 LastChar: 33 FontDescriptor: FontName: ONQKSW+WarnockPro-Regular28 Flags: Symbolic FontBBox: 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