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Title:          Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution
Subject:        Nature Communications, doi:10.1038/s41467-023-35911-8
Keywords:       
Author:         Laureano Tomás-Daza
Creator:        Springer
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     Item: 
      Title: Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-„resolution
      Destination: title_link
      Children: 
       Item: 
        Title: Results
        Destination: A1
        Children: 
         Item: 
          Title: Development and optimization of liCHi-C for low-input samples
          Destination: B1
         Item: 
          Title: Comparison of liCHi-C with other C-based methods for profiling promoter interactomes
          Destination: B2
         Item: 
          Title: liCHi-C efficiently captures promoter interactomes across different hematopoietic lineages
          Destination: B3
         Item: 
          Title: Promoter interactomes reshape transcriptional trajectories during in’vivo cell commitment
          Destination: B4
         Item: 
          Title: liCHi-C enables the discovery of disease-relevant cell types and disease-associated genes and pathways
          Destination: B5
         Item: 
          Title: liCHi-C can be used to simultaneously diagnose and discover translocations, copy number variations (CNVs) and topological alterations in tumoral samples
          Destination: B6
         Item: 
          Title: liCHi-C can be customized to improve its resolution
          Destination: B7
       Item: 
        Title: Discussion
        Destination: A2
       Item: 
        Title: Methods
        Destination: A3
        Children: 
         Item: 
          Title: Cell isolation
          Destination: B8
         Item: 
          Title: Fixation and cell quantification
          Destination: B9
         Item: 
          Title: liCHi-C method
          Destination: B10
         Item: 
          Title: Sequencing
          Destination: B11
         Item: 
          Title: B-ALL cytogenetic and FISH analysis
          Destination: B12
         Item: 
          Title: liCHi-C processing
          Destination: B13
         Item: 
          Title: liCHi-C interaction calling
          Destination: B14
         Item: 
          Title: Loop calling using Hi-C, low-C, and TagHi-C
          Destination: B15
         Item: 
          Title: Clustering of promoter interactions
          Destination: B16
         Item: 
          Title: ChIP-seq processing
          Destination: B17
         Item: 
          Title: Histones mark enrichment at PIRs
          Destination: B18
         Item: 
          Title: Chromatin assortativity
          Destination: B19
         Item: 
          Title: Gene ontology and pathways enrichment analysis
          Destination: B20
         Item: 
          Title: Data visualization
          Destination: B21
         Item: 
          Title: GWAS summary statistics and imputation
          Destination: B22
         Item: 
          Title: GWAS enrichment at PIRs
          Destination: B23
         Item: 
          Title: liCHi-C GWAS prioritizing genes
          Destination: B24
         Item: 
          Title: SVs analysis
          Destination: B25
         Item: 
          Title: Institutional review board statement
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         Item: 
          Title: Reporting summary
          Destination: B27
       Item: 
        Title: Data availability
        Destination: M1
       Item: 
        Title: Code availability
        Destination: M2
       Item: 
        Title: References
        Destination: A4
       Item: 
        Title: Acknowledgements
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       Item: 
        Title: Author contributions
        Destination: A6
       Item: 
        Title: Competing interests
        Destination: A7
       Item: 
        Title: Additional information
        Destination: M3
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    Title: Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution
    Author: Laureano Tomás-Daza
    Subject: Nature Communications, doi:10.1038/s41467-023-35911-8
    Keywords: 
    Creator: Springer
    Producer: iText® 5.3.5 ©2000-2012 1T3XT BVBA (SPRINGER SBM; licensed version)
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               <rdf:li xml:lang="x-default">Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution</rdf:li>
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               <rdf:li>Laureano Tomás-Daza</rdf:li>
               <rdf:li>Llorenç Rovirosa</rdf:li>
               <rdf:li>Paula López-Martí</rdf:li>
               <rdf:li>Andrea Nieto-Aliseda</rdf:li>
               <rdf:li>François Serra</rdf:li>
               <rdf:li>Ainoa Planas-Riverola</rdf:li>
               <rdf:li>Oscar Molina</rdf:li>
               <rdf:li>Rebecca McDonald</rdf:li>
               <rdf:li>Cedric Ghevaert</rdf:li>
               <rdf:li>Esther Cuatrecasas</rdf:li>
               <rdf:li>Dolors Costa</rdf:li>
               <rdf:li>Mireia Camós</rdf:li>
               <rdf:li>Clara Bueno</rdf:li>
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