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Destination: titlink1 Children: Item: Title: Introduction Destination: flink1 Item: Title: Results Destination: flink2 Children: Item: Title: Cohort description Destination: slink1 Item: Title: Isolate typing Destination: slink2 Item: Title: Antibiotic resistance genes Destination: slink3 Item: Title: Virulence factors Destination: slink4 Item: Title: Plasmids Destination: slink5 Item: Title: Prophages Destination: slink6 Item: Title: Pandemic-associated features Destination: slink7 Item: Title: Discussion Destination: flink3 Children: Item: Title: Global insights into S. aureus clinics, antibiotic resistance, and virulence Destination: slink8 Item: Title: Changes in molecular characteristics of pandemic S. aureus isolates Destination: slink9 Item: Title: Limitations of the study Destination: slink10 Item: Title: Supplemental information Destination: falink4 Item: Title: Acknowledgments Destination: acklink1 Item: Title: Author contributions Destination: flink5 Item: Title: Declaration of interests Destination: flink6 Item: Title: References Destination: blink1 Item: Title: STAR★Methods Destination: flink7 Children: Item: Title: Key resources table Destination: slink11 Item: Title: Resource availability Destination: slink12 Children: Item: Title: Lead contact Destination: tlink1 Item: Title: Materials availability Destination: tlink2 Item: Title: Data and code availability Destination: tlink3 Item: Title: Experimental model and study participant details Destination: slink13 Children: Item: Title: Patients and setting Destination: tlink4 Item: Title: Clinical data Destination: tlink5 Item: Title: Strain isolation and manipulation Destination: tlink6 Item: Title: Ethics statement Destination: tlink7 Item: Title: Method details Destination: slink14 Children: Item: Title: Whole-genome sequencing and de novo assembly Destination: tlink8 Children: Item: Title: DNA extraction Destination: ftlink9 Item: Title: DNA sequencing Destination: ftlink10 Item: Title: Quality control 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DOMLKD+AdvPS3F4C13 Flags: Nonsymbolic FontBBox: 0, -291, 875, 697 FontFile3: true Encoding: WinAnsiEncoding Font: BaseFont: DOMPJM+AdvP4C4E74 FontSubset: true FirstChar: 2 LastChar: 48 FontDescriptor: FontName: DOMPJM+AdvP4C4E74 Flags: Symbolic FontBBox: -20, -958, 1114, 770 FontFile3: true EncodingDictionary: Differences: true ToUnicode: true XMP: application/pdf doi:10.1016/j.isci.2024.110402 Genomic analysis of Staphylococcus aureus isolates from bacteremia reveals genetic features associated with the COVID-19 pandemic Miquel Sánchez-Osuna Marc Pedrosa Paula Bierge Inmaculada Gómez-Sánchez Marina Alguacil-Guillén Mateu Espasa Ivan Erill Oriol Gasch Oscar Q. Pich Evolutionary mechanisms Genomic analysis Microbial genomics ISCIENCE, 27 (2024) 110402. doi:10.1016/j.isci.2024.110402 The Author(s) journal ISCIENCE © 2024 The Author(s). Published by Elsevier Inc. 2589-0042 27 8 16 August 2024 2024-08-16 110402 110402 10.1016/j.isci.2024.110402 https://doi.org/10.1016/j.isci.2024.110402 2010-04-23 true 10.1016/j.isci.2024.110402 elsevier.com sciencedirect.com VoR 7.0 10.1016/j.isci.2024.110402 noindex true 2010-04-23 true sciencedirect.com elsevier.com Elsevier 2024-07-12T02:30:53+05:30 2024-07-12T02:37:23+05:30 2024-07-12T02:37:23+05:30 True 1 https://www.elsevier.com/tdm/tdmrep-policy.json Acrobat Distiller 8.1.0 (Windows) uuid:e0c12383-812e-442c-bbe3-9dfc90004c0b uuid:e37161ae-ffb3-4e77-b28a-9287180cd2ff http://creativecommons.org/licenses/by-nc/4.0/ Pages: Page: Label: 1 Annotations: Annotation: Subtype: Link Rect: 455, 449, 510, 455 Annotation: Subtype: Link Rect: 455, 440, 504, 446 Annotation: Subtype: Link Rect: 455, 68, 518, 74 Annotation: Subtype: Link Rect: 455, 60, 501, 66 Annotation: Subtype: Link Rect: 57, 16, 73, 32 Page: Label: 2 Annotations: Annotation: Subtype: Link Rect: 162, 579, 166, 589 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