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to neutral and alkaline salinity in Arabidopsis thaliana Destination: mk:title Children: Item: Title: 1 Introduction Destination: mk:H1_1 Item: Title: 2 Material & Methods Destination: mk:H1_2 Children: Item: Title: 2.1 Plant material Destination: mk:H2_1 Item: Title: 2.2 Irrigation experiment Destination: mk:H2_2 Item: Title: 2.3 Mineral nutrient analysis Destination: mk:H2_3 Item: Title: 2.4 PSII efficiency Destination: mk:H2_4 Item: Title: 2.5 Endogenous phytohormones Destination: mk:H2_5 Item: Title: 2.6 Transcriptome profiling Destination: mk:H2_6 Children: Item: Title: 2.6.1 Total RNA Exaction and RNA-Seq Library Preparation Destination: mk:H3_7 Item: Title: 2.6.2 RNA-Seq analysis Destination: mk:H3_8 Item: Title: 2.6.3 Quantitative real-time PCR validation Destination: mk:H3_9 Item: Title: 2.6.4 Gene functional annotation Destination: mk:H3_10 Item: Title: 2.6.5 Protein-Protein Interaction (PPI) Network Analysis Destination: mk:H3_11 Item: Title: 2.6.6 WGCNA network analysis Destination: mk:H3_12 Item: Title: 2.7 Statistical Analysis Destination: mk:H2_13 Item: Title: 3 Results & Discussion Destination: mk:H1_3 Children: Item: Title: 3.1 Demes from coastal siliceous soils display reduced growth and photosynthesis under alkaline salinity Destination: mk:H2_14 Item: Title: 3.2 Alkaline salinity disrupts leaf nutrient distribution in demes adapted to neutral salinity Destination: mk:H2_15 Item: Title: 3.3 Transcriptome profiling confirms exacerbated effects of alkaline salinity on NS demes Destination: mk:H2_16 Item: Title: 3.4 Enhanced inhibition of photosynthesis and carbon metabolism genes in carbonate-sensitive demes under alkSAL Destination: mk:H2_17 Item: Title: 3.5 Salinity-triggered phytohormone responses are alkalinity-dependent Destination: mk:H2_18 Item: Title: 3.6 A reduced coreSAL DEG subset orchestrates contrasted plant response to neuSAL and alkSAL Destination: mk:H2_19 Item: Title: 3.7 Weighted Correlation Network Analysis tag the significant candidate genes involved in favorable responses to both salin ... Destination: mk:H2_20 Item: Title: 4 Conclusions Destination: mk:H1_4 Item: Title: Author Statement Destination: mk:H1_5 Item: Title: CRediT authorship contribution statement Destination: mk:H1_6 Item: Title: Declaration of Competing Interest Destination: mk:HH1_9 Item: Title: Acknowledgements Destination: mk:HH1_10 Item: Title: Declaration of interest statement Destination: mk:H1_7 Item: Title: Appendix A Supporting information Destination: mk:H1_8 Item: Title: References Destination: mk:HH2_1 Info: Title: At the core of salinity: Divergent transcriptomic responses to neutral and alkaline salinity in Arabidopsis thaliana Author: Maria Almira-Casellas Subject: Environmental and Experimental Botany, 228 (2024) 105982. doi:10.1016/j.envexpbot.2024.105982 Keywords: Arabidopsis demes,Abiotic stress,Alkaline salinity,Transcriptome,WGCNA Creator: Elsevier Producer: Acrobat Distiller 8.1.0 (Windows) CreationDate: Mon Dec 09 21:51:58 CET 2024 ModDate: Wed Dec 11 02:27:26 CET 2024 ID: 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Environmental and Experimental Botany, 228 (2024) 105982. doi:10.1016/j.envexpbot.2024.105982 Arabidopsis demes Abiotic stress Alkaline salinity Transcriptome WGCNA At the core of salinity: Divergent transcriptomic responses to neutral and alkaline salinity in Arabidopsis thaliana Maria Almira-Casellas Sílvia Busoms Laura Pérez-Martín Glòria Escolà Álvaro López-Valiñas Antoni Garcia-Molina Mercè Llugany Charlotte Poschenrieder VoR 11th December 2024 Acrobat Distiller 8.1.0 (Windows) Arabidopsis demes,Abiotic stress,Alkaline salinity,Transcriptome,WGCNA 11th December 2024 sciencedirect.com elsevier.com true 2010-04-23 10.1016/j.envexpbot.2024.105982 noindex journal © 2024 The Author(s). 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