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Item: Title: The scaffolding function of LSD1 controls DNA methylation in mouse ESCs Destination: title_link Children: Item: Title: Results Destination: A1 Children: Item: Title: Lsd1 is dispensable for mouse ESC self-renewal Destination: B1 Item: Title: Ablation of Lsd1 leads to defective differentiation Destination: B2 Item: Title: Loss of LSD1 results in accumulation of H3K4me1 Destination: B3 Item: Title: Loss of LSD1 leads to global DNA hypomethylation Destination: B4 Item: Title: LSD1 regulates DNMT1 and UHRF1 protein levels independently of its catalytic activity Destination: B5 Item: Title: LSD1 promotes DNMT1 and UHRF1 stability by preventing proteasomal degradation Destination: B6 Item: Title: LSD1 facilitates deacetylation and deubiquitination of DNMT1 and UHRF1 Destination: B7 Item: Title: Discussion Destination: A2 Children: Item: Title: Limitations of the study Destination: B8 Item: Title: Methods Destination: A3 Children: Item: Title: Antibodies Destination: B9 Item: Title: Cell culture Destination: B10 Item: Title: Lentiviral production and generation of Usp7, Rcor1 and Rcor2 KD mouse ESCs Destination: B11 Item: Title: Generation of stable cell line expressing LSD1A540E, LSD1K662A, LSD1MUT, and LSD1WT in Lsd1 KO ESCs Destination: B12 Item: Title: Generation of DNMT1 and UHRF1-inducible Lsd1 KO ESCs Destination: B13 Item: Title: RA and EB differentiation assays Destination: B14 Item: Title: Generation of CRISPR/Cas9 Knockouts Destination: B15 Item: Title: Mismatch detection assay by T7 endonuclease of Lsd1 knockouts Destination: B16 Item: Title: Alkaline phosphatase activity Destination: B17 Item: Title: Immunofluorescence staining Destination: B18 Item: Title: RT-qPCR analysis Destination: B19 Item: Title: RNA-Seq library preparation Destination: B20 Item: Title: RNA-Seq analysis Destination: B21 Item: Title: Cellular proliferation Destination: B22 Item: Title: Apoptosis assay, and cell cycle analyses Destination: B23 Item: Title: MTT assay Destination: B24 Item: Title: Metabolic analysis Destination: B25 Item: Title: Gastruloids aggregation assay Destination: B26 Item: Title: Whole cell extract preparation Destination: B27 Item: Title: Nuclear extraction Destination: B28 Item: Title: Subcellular protein fractionation Destination: B29 Item: Title: Co-immunoprecipitation and immunoblotting Destination: B30 Item: Title: Ubiquitination assay Destination: B31 Item: Title: DNA dot blots Destination: B32 Item: Title: Whole-genome bisulfite sequencing analysis Destination: B33 Item: Title: Quantitative analysis of DNA methylation levels using LC-MS/MS Destination: B34 Item: Title: Mouse DNA methylation beadChip Array Destination: B35 Item: Title: Quantitative analysis of histone modifications using LC-MS/MS Destination: B36 Item: Title: Chromatin immunoprecipitation (ChIP) Destination: B37 Item: Title: ChIP-seq analysis Destination: B38 Item: Title: CUT&RUN LoV-U Destination: B39 Item: Title: CUT&RUN data analysis Destination: B40 Item: Title: Gene ontology (GO) analysis Destination: B41 Item: Title: Heatmaps Destination: B42 Item: Title: His10-SUMO-LSD1 expression and purification Destination: B43 Item: Title: Enzymatic activity of LSD1 Destination: B44 Item: Title: UHRF1 demethylation assay Destination: B45 Item: Title: LSD1 inhibitors treatment Destination: B46 Item: Title: CHX treatment and proteasome inhibition Destination: B47 Item: Title: Trichostatin A (TSA) and SAHA treatment Destination: B48 Item: Title: USP7 inhibitor (P22077) treatment Destination: B49 Item: Title: Mass spectrometry-based proteomics Destination: B50 Item: Title: Statistical analysis Destination: B51 Item: Title: Reporting summary Destination: B52 Item: Title: Data availability Destination: M1 Item: Title: References Destination: A4 Item: Title: Acknowledgements Destination: A5 Item: Title: Author contributions Destination: A6 Item: Title: Funding Destination: A7 Item: Title: Competing interests Destination: A8 Item: Title: 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García-Prieto Jonatan Caroli Anna Nordin Trinh T. T. Phan Devi Prasad Bhattarai Carlos Martinez-Gamero Eshagh Dorafshan Stephanie Stransky Damiana Álvarez-Errico Paulina Avovome Saiki Weiyi Lai Cong Lyu Ludvig Lizana Jonathan D. Gilthorpe Hailin Wang Simone Sidoli Andre Mateus Dung-Fang Lee Claudio Cantù Manel Esteller Andrea Mattevi Angel-Carlos Roman Francesca Aguilo Springer US Nature Communications, doi:10.1038/s41467-024-51966-7 10.1038/s41467-024-51966-7 http://dx.doi.org/10.1038/s41467-024-51966-7 journal Nature Communications © 2024, The Author(s) 2041-1723 10.1038/s41467-024-51966-7 springer.com springerlink.com 2010-04-23 True 10.1038/s41467-024-51966-7 springer.com springerlink.com Springer 2024-09-05T13:37:45+02:00 2024-09-04T22:10:51+05:30 2024-09-05T13:37:45+02:00 True VoR uuid:8491a3fc-e728-4a3d-97d1-f1d56f6ad028 uuid:8419dd49-97a8-4ce6-93a0-ba353a79f1ee default 1 converted uuid:cdfac1d1-8d2f-4181-ad43-8a7a666783fb converted to PDF/A-2b pdfToolbox 2024-09-04T22:12:04+05:30 2 B Carlos A. García-Prieto http://orcid.org/0000-0001-5021-6916 Anna Nordin http://orcid.org/0000-0002-5868-4797 Trinh T. T. 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For a resource within an xmpMM:Ingredients list, the ResourceRef uses this type to identify both the portion of the containing document that refers to the resource, and the portion of the referenced resource that is referenced. http://ns.adobe.com/xap/1.0/sType/Part# stPart Part http://ns.adobe.com/pdf/1.3/ pdf Adobe PDF Schema internal A name object indicating whether the document has been modified to include trapping information Trapped Text http://ns.adobe.com/xap/1.0/t/pg/ xmpTPg XMP Paged-Text internal XMP08 Spec: An ordered array of plate names that are needed to print the document (including any in contained documents). 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