98b56152779314d32395859358baf2fb plaphy_a2024m12v196n4p2730-2748.pdf 538853e4bb50a27f649a7afaa6f5b7df8fc8f23e plaphy_a2024m12v196n4p2730-2748.pdf 72fcf397642463fb6bcb9a96cd7a61476f36f74628d9b00a13088af72f0869f9 plaphy_a2024m12v196n4p2730-2748.pdf Title: The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers Subject: DOI: 10.1093/plphys/kiae213; Plant Physiology, 196, 4, 2024-04-12.; Abstract: Natural variation in trichome pattern (amount and distribution) is prominent among populations of many angiosperms. However, the degree of parallelism in the genetic mechanisms underlying this diversity and its environmental drivers in different species remain unclear. To address these questions, we analyzed the genomic and environmental bases of leaf trichome pattern diversity in Cardamine hirsuta, a relative of Arabidopsis (Arabidopsis thaliana). We characterized 123 wild accessions for their genomic diversity, leaf trichome patterns at different temperatures, and environmental adjustments. Nucleotide diversities and biogeographical distribution models identified two major genetic lineages with distinct demographic and adaptive histories. Additionally, C. hirsuta showed substantial variation in trichome pattern and plasticity to temperature. Trichome amount in C. hirsuta correlated positively with spring precipitation but negatively with temperature, which is opposite to climatic patterns in A. thaliana. Contrastingly, genetic analysis of C. hirsuta glabrous accessions indicated that, like for A. thaliana, glabrousness is caused by null mutations in ChGLABRA1 (ChGL1). Phenotypic genome-wide association studies (GWAS) further identified a ChGL1 haplogroup associated with low trichome density and ChGL1 expression. Therefore, a ChGL1 series of null and partial loss-of-function alleles accounts for the parallel evolution of leaf trichome pattern in C. hirsuta and A. thaliana. Finally, GWAS also detected other candidate genes (e.g. ChETC3, ChCLE17) that might affect trichome pattern. Accordingly, the evolution of this trait in C. hirsuta and A. thaliana shows partially conserved genetic mechanisms but is likely involved in adaptation to different environments. Keywords: Author: Alberto Fuster-Pons Creator: Servigistics Arbortext Advanced Print Publisher 11.1.4546/W-x64 Producer: PDFlib+PDI 9.0.7p3 (C++/Win64); modified using iTextSharp.LGPLv2.Core 3.7.4.0 CreationDate: Thu Nov 28 02:19:04 2024 CET ModDate: Mon Oct 20 14:15:39 2025 CEST Custom Metadata: yes Metadata Stream: yes Tagged: yes UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 19 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 1852996 bytes Optimized: no PDF version: 1.6 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- FSEWGH+CronosPro-Semibold Type 1C Custom yes yes yes 44 0 UGDKZK+CronosPro-Regular Type 1C Custom yes yes yes 45 0 IZOADA+CronosPro-Bold Type 1C Custom yes yes yes 46 0 AYCHOX+CronosPro-Italic Type 1C Custom yes yes yes 47 0 IHQHBI+CronosPro-SemiboldIt Type 1C Custom yes yes yes 48 0 MHEXDG+ArialMT TrueType WinAnsi yes yes no 1 0 UMXQCH+STIXGeneral-Regular Type 1C Custom yes yes yes 49 0 Jhove (Rel. 1.28.0, 2023-05-18) Date: 2025-10-21 03:49:47 CEST RepresentationInformation: plaphy_a2024m12v196n4p2730-2748.pdf ReportingModule: PDF-hul, Rel. 1.12.4 (2023-03-16) LastModified: 2025-10-20 14:19:46 CEST Size: 1852996 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf Profile: Tagged PDF PDFMetadata: Objects: 1798 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: true NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: OneColumn PageMode: UseOutlines Language: en Outlines: Item: Title: The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers Destination: head1 Children: Item: Title: Introduction Destination: seckiae213-s0 Item: Title: Results Destination: seckiae213-s1 Children: Item: Title: Genetic, geographic, and environmental structure of Cardamine nucleotide diversity Destination: seckiae213-s1.1 Item: Title: Ontogenic and genetic variation for leaf trichome pattern Destination: seckiae213-s1.2 Item: Title: Natural diversity for leaf trichome pattern at different temperatures Destination: seckiae213-s1.3 Item: Title: Geographic and climatic distribution of leaf trichome pattern diversity Destination: seckiae213-s1.4 Item: Title: GWAS of leaf trichome pattern and climatic variables Destination: seckiae213-s1.5 Item: Title: Functional characterization of a ChGL1 allelic series affecting leaf trichome pattern Destination: seckiae213-s1.6 Item: Title: Discussion Destination: seckiae213-s2 Children: Item: Title: The Iberian Peninsula as a highly diverse region for comparative analyses of Cardamine and Arabidopsis Destination: seckiae213-s2.1 Item: Title: Different environmental drivers shape the leaf trichome diversity of Cardamine and Arabidopsis Destination: seckiae213-s2.2 Item: Title: Conserved genetic mechanisms account for the trichome diversity of Cardamine and Arabidopsis Destination: seckiae213-s2.3 Item: Title: Materials and methods Destination: seckiae213-s3 Children: Item: Title: Plant material and environmental data Destination: seckiae213-s3.1 Item: Title: Growth conditions and phenotypic analyses Destination: seckiae213-s3.2 Item: Title: Distribution modeling and environmental analyses Destination: seckiae213-s3.3 Item: Title: Genome sequencing and genetic structure Destination: seckiae213-s3.4 Item: Title: Phenotypic and environmental GWAS Destination: seckiae213-s3.5 Item: Title: ChGL1 sequencing, phylogenetic, and expression analyses Destination: seckiae213-s3.6 Item: Title: Other statistical analyses Destination: seckiae213-s3.7 Item: Title: Accession numbers Destination: seckiae213-s3.8 Item: Title: Acknowledgements Destination: acknow Item: Title: Author contributions Destination: seckiae213-s4 Item: Title: Supplementary data Destination: seckiae213-s5 Item: Title: Funding Destination: seckiae213-s6 Item: Title: Data availability Destination: seckiae213-s7 Item: Title: References Destination: reflist Info: Title: The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers Author: Alberto Fuster-Pons Subject: DOI: 10.1093/plphys/kiae213; Plant Physiology, 196, 4, 2024-04-12.; Abstract: Natural variation in trichome pattern (amount and distribution) is prominent among populations of many angiosperms. However, the degree of parallelism in the genetic mechanisms underlying this diversity and its environmental drivers in different species remain unclear. To address these questions, we analyzed the genomic and environmental bases of leaf trichome pattern diversity in Cardamine hirsuta, a relative of Arabidopsis (Arabidopsis thaliana). We characterized 123 wild accessions for their genomic diversity, leaf trichome patterns at different temperatures, and environmental adjustments. Nucleotide diversities and biogeographical distribution models identified two major genetic lineages with distinct demographic and adaptive histories. Additionally, C. hirsuta showed substantial variation in trichome pattern and plasticity to temperature. Trichome amount in C. hirsuta correlated positively with spring precipitation but negatively with temperature, which is opposite to climatic patterns in A. thaliana. Contrastingly, genetic analysis of C. hirsuta glabrous accessions indicated that, like for A. thaliana, glabrousness is caused by null mutations in ChGLABRA1 (ChGL1). Phenotypic genome-wide association studies (GWAS) further identified a ChGL1 haplogroup associated with low trichome density and ChGL1 expression. Therefore, a ChGL1 series of null and partial loss-of-function alleles accounts for the parallel evolution of leaf trichome pattern in C. hirsuta and A. thaliana. Finally, GWAS also detected other candidate genes (e.g. ChETC3, ChCLE17) that might affect trichome pattern. Accordingly, the evolution of this trait in C. hirsuta and A. thaliana shows partially conserved genetic mechanisms but is likely involved in adaptation to different environments. Keywords: Creator: Servigistics Arbortext Advanced Print Publisher 11.1.4546/W-x64 Producer: PDFlib+PDI 9.0.7p3 (C++/Win64); modified using iTextSharp.LGPLv2.Core 3.7.4.0 CreationDate: Thu Nov 28 02:49:04 CET 2024 ModDate: Mon Oct 20 14:15:39 CEST 2025 ID: 0x7c188f3a7f45b21a0a1b25e35ea21bfa, 0x6ec0864251a3ac1831635a2626965bef Filters: FilterPipeline: FlateDecode FilterPipeline: DCTDecode Images: Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1413 ImageHeight: 180 BitsPerSample: 8 BitsPerSampleUnit: integer Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1200 ImageHeight: 1689 BitsPerSample: 8 BitsPerSampleUnit: integer Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 559 ImageHeight: 1436 BitsPerSample: 8 BitsPerSampleUnit: integer Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1204 ImageHeight: 1304 BitsPerSample: 8 BitsPerSampleUnit: integer Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1270 ImageHeight: 1390 BitsPerSample: 8 BitsPerSampleUnit: integer Image: NisoImageMetadata: FormatName: image/jpg CompressionScheme: JPEG ImageWidth: 1204 ImageHeight: 1080 BitsPerSample: 8 BitsPerSampleUnit: integer Fonts: Type1: Font: BaseFont: IHQHBI+CronosPro-SemiboldIt FontSubset: true FirstChar: 1 LastChar: 15 FontDescriptor: FontName: IHQHBI+CronosPro-SemiboldIt Flags: Nonsymbolic, Italic FontBBox: -190, -303, 1135, 884 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: UMXQCH+STIXGeneral-Regular FontSubset: true FirstChar: 1 LastChar: 10 FontDescriptor: FontName: UMXQCH+STIXGeneral-Regular Flags: Nonsymbolic FontBBox: -995, -455, 2000, 1055 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: FSEWGH+CronosPro-Semibold FontSubset: true FirstChar: 1 LastChar: 67 FontDescriptor: FontName: FSEWGH+CronosPro-Semibold Flags: Nonsymbolic FontBBox: -185, -287, 1135, 885 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: UGDKZK+CronosPro-Regular FontSubset: true FirstChar: 1 LastChar: 92 FontDescriptor: FontName: UGDKZK+CronosPro-Regular Flags: Nonsymbolic FontBBox: -179, -270, 1129, 886 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: IZOADA+CronosPro-Bold FontSubset: true FirstChar: 1 LastChar: 76 FontDescriptor: FontName: IZOADA+CronosPro-Bold Flags: Nonsymbolic, ForceBold FontBBox: -187, -295, 1137, 885 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true Font: BaseFont: AYCHOX+CronosPro-Italic FontSubset: true FirstChar: 1 LastChar: 61 FontDescriptor: FontName: AYCHOX+CronosPro-Italic Flags: Nonsymbolic, Italic FontBBox: -191, -281, 1129, 880 FontFile3: true EncodingDictionary: BaseEncoding: WinAnsiEncoding Differences: true ToUnicode: true TrueType: Font: BaseFont: MHEXDG+ArialMT FontSubset: true FirstChar: 32 LastChar: 121 FontDescriptor: FontName: MHEXDG+ArialMT Flags: Nonsymbolic FontBBox: -664, -324, 2000, 1039 FontFile2: true Encoding: WinAnsiEncoding XMP: uuid:1e0638b2-d4a1-4725-bfe7-b5918b0d5d19 uuid:81C206BB-CA2C-7B3B-7BAB-170A3C297507 True PDFlib+PDI 9.0.7p3 (C++/Win64); modified using iTextSharp.LGPLv2.Core 3.7.4.0 application/pdf 10.1093/plphys/kiae213 en Oxford University Press The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers Alberto Fuster-Pons Alba Murillo-Sánchez Belén Méndez-Vigo Arnald Marcer Bjorn Pieper Rafael Torres-Pérez Juan Carlos Oliveros Miltos Tsiantis F. Xavier Picó Carlos Alonso-Blanco DOI: 10.1093/plphys/kiae213; Plant Physiology, 196, 4, 2024-04-12.; Abstract: Natural variation in trichome pattern (amount and distribution) is prominent among populations of many angiosperms. However, the degree of parallelism in the genetic mechanisms underlying this diversity and its environmental drivers in different species remain unclear. To address these questions, we analyzed the genomic and environmental bases of leaf trichome pattern diversity in Cardamine hirsuta, a relative of Arabidopsis (Arabidopsis thaliana). We characterized 123 wild accessions for their genomic diversity, leaf trichome patterns at different temperatures, and environmental adjustments. Nucleotide diversities and biogeographical distribution models identified two major genetic lineages with distinct demographic and adaptive histories. Additionally, C. hirsuta showed substantial variation in trichome pattern and plasticity to temperature. Trichome amount in C. hirsuta correlated positively with spring precipitation but negatively with temperature, which is opposite to climatic patterns in A. thaliana. Contrastingly, genetic analysis of C. hirsuta glabrous accessions indicated that, like for A. thaliana, glabrousness is caused by null mutations in ChGLABRA1 (ChGL1). Phenotypic genome-wide association studies (GWAS) further identified a ChGL1 haplogroup associated with low trichome density and ChGL1 expression. Therefore, a ChGL1 series of null and partial loss-of-function alleles accounts for the parallel evolution of leaf trichome pattern in C. hirsuta and A. thaliana. Finally, GWAS also detected other candidate genes (e.g. ChETC3, ChCLE17) that might affect trichome pattern. Accordingly, the evolution of this trait in C. hirsuta and A. thaliana shows partially conserved genetic mechanisms but is likely involved in adaptation to different environments. © The Author(s) 2024. Published by Oxford University Press on behalf of American Society of Plant Biologists. Journal Plant Physiology © The Author(s) 2024. 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