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Title:           Jumping through hoops: Structural rearrangements and accelerated mutation rates on Dendrodorididae (Mollusca: Nudibranchia) mitogenomes rumble their evolution
Subject:         Molecular Phylogenetics and Evolution, 201 (2024) 108218. doi:10.1016/j.ympev.2024.108218
Keywords:        Mollusca,dN /d S,Protein modeling,Systematics,Cyto-nuclear discordance
Author:          Carles Galià-Camps
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      Title: Jumping through hoops: Structural rearrangements and accelerated mutation rates on Dendrodorididae (Mollusca: Nudibranchia) ...
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       Item: 
        Title: 1 Introduction
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        Title: 2 Material & Methods
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         Item: 
          Title: 2.1 Taxon sampling
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          Title: 2.2 DNA extraction and library preparation
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          Title: 2.3 Data curation, assembly, and annotation
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          Title: 2.4 Mitogenome and gene characteristics
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          Title: 2.5 OXPHOS protein structure models
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          Title: 2.6 Mitochondrial phylogenies
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          Title: 2.7 Nuclear genomes quality and gene features
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          Title: 2.8 Nuclear and combined phylogenies
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          Title: 2.9 Nuclear genes signal
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        Title: 3 Results
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          Title: 3.1 Mitochondrial and nuclear assembly features
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          Title: 3.2 Mutation rates of mitochondrial and nuclear genes
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          Title: 3.3 Protein structure models
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          Title: 3.4 Nuclear SNPs differentiate family members
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          Title: 3.5 Phylogenetic analyses
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           Item: 
            Title: 3.5.1 Mitochondrial datasets
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            Title: 3.5.2 Nuclear datasets
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            Title: 3.5.3 Combined datasets
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        Title: 4 Discussion
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          Title: 4.1 Mitochondrial gene reorganization and mutation rates
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          Title: 4.2 Protein models support orthology by functionality
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          Title: 4.3 Dendrodorididae systematics and evolution
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          Title: 4.4 Nuclear data supports divergent evolution of smooth Dendrodoris
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        Title: 5 Conclusions
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        Title: CRediT authorship contribution statement
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        Title: Declaration of competing interest
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        Title: Acknowledgements
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        Title: Appendix A Supplementary material
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        Title: datalink4
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        Title: References
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    Author: Carles Galià-Camps
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  Checksum: 93063cfa
   Type: CRC32
  Checksum: 0762a290f4e0ab5dba8f483c7fad6cc0
   Type: MD5
  Checksum: c7b956f347a49e9d094e17b7b43368089dc9b7ad
   Type: SHA-1
  Checksum: 298dab2bbf908c78a2fdf8ec139a0ce6fc48f1926ca0a63dac1713f04dbe975d
   Type: SHA-256