5b41859d560fb1e8afcd9dc67fae7c5f kiae417.pdf 657aa868548edfba0e31b6d28afd45c7dac31d1e kiae417.pdf f790b52d6d3727e0d386e5364069c3de28782ffde2ef1625d80b6edc439946ad kiae417.pdf Title: Temporal and spatial frameworks supporting plant responses to vegetation proximity Subject: DOI: 10.1093/plphys/kiae417; Plant Physiology, 196, 3, 2024-08-14.; Abstract: After the perception of vegetation proximity by phytochrome photoreceptors, shade-avoider plants initiate a set of responses known as the shade avoidance syndrome (SAS). Shade perception by the phytochrome B (phyB) photoreceptor unleashes the PHYTOCHROME INTERACTING FACTORs and initiates SAS responses. In Arabidopsis (Arabidopsis thaliana) seedlings, shade perception involves rapid and massive changes in gene expression, increases auxin production, and promotes hypocotyl elongation. Other components, such as phyA and ELONGATED HYPOCOTYL 5, also participate in the shade regulation of the hypocotyl elongation response by repressing it. However, why and how so many regulators with either positive or negative activities modulate the same response remains unclear. Our physiological, genetic, cellular, and transcriptomic analyses showed that (i) these components are organized into 2 main branches or modules and (ii) the connection between them is dynamic and changes with the time of shade exposure. We propose a model for the regulation of shade-induced hypocotyl elongation in which the temporal and spatial functional importance of the various SAS regulators analyzed here helps to explain the coexistence of differentiated regulatory branches with overlapping activities. Keywords: Author: Pedro Pastor-Andreu Creator: Servigistics Arbortext Advanced Print Publisher 11.1.4546/W-x64 Producer: PDFlib+PDI 9.0.7p3 (C++/Win64); modified using iTextSharp 4.1.6 by 1T3XT CreationDate: Fri Oct 25 08:43:48 2024 CEST ModDate: Fri Nov 22 17:53:55 2024 CET Custom Metadata: yes Metadata Stream: yes Tagged: yes UserProperties: no Suspects: no Form: AcroForm JavaScript: no Pages: 16 Encrypted: no Page size: 595.276 x 782.362 pts Page rot: 0 File size: 1371794 bytes Optimized: no PDF version: 1.6 name type encoding emb sub uni object ID ------------------------------------ ----------------- ---------------- --- --- --- --------- JFQAVB+STIXGeneral-Regular Type 1C Custom yes yes yes 49 0 YFFVJM+CaeciliaLTStd-LightItalic Type 1C Custom yes yes yes 41 0 SJHBTM+CaeciliaLTStd-Heavy Type 1C Custom yes yes yes 50 0 ZQOIRP+CaeciliaLTStd-Light Type 1C Custom yes yes yes 42 0 GIESTG+CaeciliaLTStd-Bold Type 1C Custom yes yes yes 43 0 ZOBZXN+ArialMT TrueType WinAnsi yes yes no 1 0 TFIQOR+TimesNewRomanPS-ItalicMT CID TrueType Identity-H yes yes yes 87 0 CDRSTV+TimesNewRomanPSMT CID TrueType Identity-H yes yes yes 96 0 Jhove (Rel. 1.28.0, 2023-05-18) Date: 2024-12-03 02:42:35 CET RepresentationInformation: kiae417.pdf ReportingModule: PDF-hul, Rel. 1.12.4 (2023-03-16) LastModified: 2024-11-29 06:00:42 CET Size: 1371794 Format: PDF Version: 1.6 Status: Well-Formed and valid SignatureMatches: PDF-hul MIMEtype: application/pdf Profile: Tagged PDF PDFMetadata: Objects: 1660 FreeObjects: 1 IncrementalUpdates: 0 DocumentCatalog: ViewerPreferences: HideToolbar: false HideMenubar: false HideWindowUI: false FitWindow: false CenterWindow: false DisplayDocTitle: true NonFullScreenPageMode: UseNone Direction: L2R ViewArea: CropBox ViewClip: CropBox PrintArea: CropBox PageClip: CropBox PageLayout: OneColumn PageMode: UseOutlines Language: en Outlines: Item: Title: Temporal and spatial frameworks supporting plant responses to vegetation proximity Destination: head1 Children: Item: Title: Introduction Destination: seckiae417-s1 Item: Title: Results Destination: seckiae417-s2 Children: Item: Title: The SAS regulatory network is organized in at least 2 genetically differentiated modules or branches Destination: seckiae417-s2.1 Item: Title: SAS regulatory components act in different moments during the shade-induced hypocotyl elongation Destination: seckiae417-s2.2 Item: Title: SAS regulatory components target overlapping but different regions along the hypocotyl axis Destination: seckiae417-s2.3 Item: Title: PIF457 and HY5 modulate the expression of shared shade-regulated genes Destination: seckiae417-s2.4 Item: Title: Discussion Destination: seckiae417-s3 Item: Title: Materials and methods Destination: seckiae417-s4 Children: Item: Title: Plant material and growth conditions Destination: seckiae417-s4.1 Item: Title: Pharmacological treatments Destination: seckiae417-s4.2 Item: Title: Genetic crosses and genotyping Destination: seckiae417-s4.3 Item: Title: Measurements of hypocotyl length Destination: seckiae417-s4.4 Item: Title: Hypocotyl measurements for the temporal analyses Destination: seckiae417-s4.5 Item: Title: Hormone analyses Destination: seckiae417-s4.6 Item: Title: Cell length measurements along the hypocotyl axis for spatial analysis Destination: seckiae417-s4.7 Item: Title: RNA extraction and gene expression analyses Destination: seckiae417-s4.8 Item: Title: Statistical analyses Destination: seckiae417-s4.9 Item: Title: RNA-seq: processing, analyses, and data availability Destination: seckiae417-s4.10 Item: Title: GO enrichment Destination: seckiae417-s4.11 Item: Title: Accession numbers Destination: seckiae417-s4.12 Item: Title: Acknowledgments Destination: acknow Item: Title: Author contributions Destination: seckiae417-s5 Item: Title: Supplementary data Destination: seckiae417-s6 Item: Title: Funding Destination: seckiae417-s7 Item: Title: References Destination: reflist Info: Title: Temporal and spatial frameworks supporting plant responses to vegetation proximity Author: Pedro Pastor-Andreu Subject: DOI: 10.1093/plphys/kiae417; Plant Physiology, 196, 3, 2024-08-14.; Abstract: After the perception of vegetation proximity by phytochrome photoreceptors, shade-avoider plants initiate a set of responses known as the shade avoidance syndrome (SAS). Shade perception by the phytochrome B (phyB) photoreceptor unleashes the PHYTOCHROME INTERACTING FACTORs and initiates SAS responses. In Arabidopsis (Arabidopsis thaliana) seedlings, shade perception involves rapid and massive changes in gene expression, increases auxin production, and promotes hypocotyl elongation. Other components, such as phyA and ELONGATED HYPOCOTYL 5, also participate in the shade regulation of the hypocotyl elongation response by repressing it. However, why and how so many regulators with either positive or negative activities modulate the same response remains unclear. Our physiological, genetic, cellular, and transcriptomic analyses showed that (i) these components are organized into 2 main branches or modules and (ii) the connection between them is dynamic and changes with the time of shade exposure. We propose a model for the regulation of shade-induced hypocotyl elongation in which the temporal and spatial functional importance of the various SAS regulators analyzed here helps to explain the coexistence of differentiated regulatory branches with overlapping activities. 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Martínez-García DOI: 10.1093/plphys/kiae417; Plant Physiology, 196, 3, 2024-08-14.; Abstract: After the perception of vegetation proximity by phytochrome photoreceptors, shade-avoider plants initiate a set of responses known as the shade avoidance syndrome (SAS). Shade perception by the phytochrome B (phyB) photoreceptor unleashes the PHYTOCHROME INTERACTING FACTORs and initiates SAS responses. In Arabidopsis (Arabidopsis thaliana) seedlings, shade perception involves rapid and massive changes in gene expression, increases auxin production, and promotes hypocotyl elongation. Other components, such as phyA and ELONGATED HYPOCOTYL 5, also participate in the shade regulation of the hypocotyl elongation response by repressing it. However, why and how so many regulators with either positive or negative activities modulate the same response remains unclear. Our physiological, genetic, cellular, and transcriptomic analyses showed that (i) these components are organized into 2 main branches or modules and (ii) the connection between them is dynamic and changes with the time of shade exposure. We propose a model for the regulation of shade-induced hypocotyl elongation in which the temporal and spatial functional importance of the various SAS regulators analyzed here helps to explain the coexistence of differentiated regulatory branches with overlapping activities. © The Author(s) 2024. Published by Oxford University Press on behalf of American Society of Plant Biologists. Journal Plant Physiology © The Author(s) 2024. 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