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Title:           ProTInSeq: transposon insertion tracking by ultra-deep DNA sequencing to identify translated large and small ORFs
Subject:         Nature Communications, doi:10.1038/s41467-024-46112-2
Keywords:        
Author:          Samuel Miravet-Verde
Creator:         Springer
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     Item: 
      Title: ProTInSeq: transposon insertion tracking by ultra-deep DNA sequencing to identify translated large and small’ORFs
      Destination: title_link
      Children: 
       Item: 
        Title: Results
        Destination: A1
        Children: 
         Item: 
          Title: Mini-transposon engineering to obtain the ProTInSeq library
          Destination: B1
         Item: 
          Title: A sequencing approach to explore protein translation in bacteria
          Destination: B2
         Item: 
          Title: Benchmark of ProTInSeq and comparative with other experimental methods in identifying translation of annotated proteins
          Destination: B3
         Item: 
          Title: Factors affecting protein identification by ProTInSeq and its use for relative quantification of expressed proteins
          Destination: B4
         Item: 
          Title: ProTInSeq insertion profiles represented transmembrane segments for NE proteins
          Destination: B5
         Item: 
          Title: Identification of unannotated proteins and SEPs using ProTInSeq
          Destination: B6
         Item: 
          Title: Function exploration and validation of unannotated SEPs by computational and experimental analyses
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       Item: 
        Title: Discussion
        Destination: A2
       Item: 
        Title: Methods
        Destination: A3
        Children: 
         Item: 
          Title: Molecular cloning
          Destination: B8
         Item: 
          Title: Bacterial strains and growth conditions
          Destination: B9
         Item: 
          Title: Transformation of M. pneumoniae
          Destination: B10
         Item: 
          Title: Transformation of mycoplasma agalactiae
          Destination: B11
         Item: 
          Title: Estimation of efficiencies of transformation in different libraries
          Destination: B12
         Item: 
          Title: Sequencing of transposon libraries
          Destination: B13
         Item: 
          Title: Definition of a M. pneumoniae annotation and intergenic database covering sequence features, -omics measures
          Destination: B14
         Item: 
          Title: Transposon insertion sites calling and visualization
          Destination: B15
         Item: 
          Title: Genome-base level labeling to explore transposition selection
          Destination: B16
         Item: 
          Title: Identification analysis by ProTInSeq
          Destination: B17
         Item: 
          Title: Identification analysis by ribosome profiling
          Destination: B18
         Item: 
          Title: Definition of a curated set of SEPs in Mycoplasma pneumoniae and predicted functional properties
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         Item: 
          Title: Reporting summary
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       Item: 
        Title: Data availability
        Destination: M1
       Item: 
        Title: Code availability
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       Item: 
        Title: References
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       Item: 
        Title: Acknowledgements
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       Item: 
        Title: Author contributions
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       Item: 
        Title: Competing interests
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       Item: 
        Title: Additional information
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