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Outlines: Item: Title: Aggrescan4D: A comprehensive tool for pH-dependent analysis and engineering of protein aggregation propensity Destination: atl_PRO_5180_ Children: Item: Title: 1 INTRODUCTION Destination: HeadingPRO_5180pro5180-sec-0001 Item: Title: 2 FROM Aggrescan3D TO Aggrescan4D: TRANSFORMATIVE ADVANCES IN PROTEIN AGGREGATION PREDICTION TECHNOLOGY Destination: HeadingPRO_5180pro5180-sec-0002 Item: Title: 3 A4D PIPELINE AND OPTIONS Destination: HeadingPRO_5180pro5180-sec-0003 Children: Item: Title: 3.1 pH calculations Destination: HeadingPRO_5180pro5180-sec-0004 Item: Title: 3.2 Stability calculations Destination: HeadingPRO_5180pro5180-sec-0005 Item: Title: 3.3 Analysis of the globular regions Destination: HeadingPRO_5180pro5180-sec-0006 Item: Title: 3.4 Dynamic mode Destination: HeadingPRO_5180pro5180-sec-0007 Item: Title: 3.5 Mutations Destination: HeadingPRO_5180pro5180-sec-0008 Item: Title: 3.6 Distance of aggregation analysis Destination: HeadingPRO_5180pro5180-sec-0009 Item: Title: 3.7 Automated mutations to improve protein solubility Destination: HeadingPRO_5180pro5180-sec-0010 Item: Title: 3.8 Privacy Destination: HeadingPRO_5180pro5180-sec-0011 Item: Title: 3.9 A4D RESTful service Destination: HeadingPRO_5180pro5180-sec-0012 Item: Title: 3.10 Database for model organisms Destination: HeadingPRO_5180pro5180-sec-0013 Item: Title: 3.11 A3D standalone package Destination: HeadingPRO_5180pro5180-sec-0014 Item: Title: 4 CASE STUDY: EVALUATION OF AGGREGATION PREDICTION METHODS WITH MEDI1912 MONOCLONAL ANTIBODY VARIANTS Destination: HeadingPRO_5180pro5180-sec-0015 Item: Title: 5 CONCLUSIONS Destination: HeadingPRO_5180pro5180-sec-0016 Item: Title: AUTHOR CONTRIBUTIONS Destination: HeadingPRO_5180pro5180-sec-0019 Item: Title: ACKNOWLEDGMENTS Destination: HeadingPRO_5180pro5180-sec-0017 Item: Title: CONFLICT OF INTEREST STATEMENT Destination: HeadingPRO_5180pro5180-sec-0018 Item: Title: ORCID Destination: HeadingPRO_5180ORCid Item: Title: REFERENCES 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