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UseOutlines Language: EN Outlines: Item: Title: EccDNA atlas in male mice reveals features protecting genes against transcription-induced eccDNA formation Destination: title_link Children: Item: Title: Results Destination: A1 Children: Item: Title: An atlas of eccDNA in healthy mice Destination: B1 Item: Title: Chromosomes produce eccDNA numbers in proportion to their size Destination: B2 Item: Title: A link between eccDNA formation and transcription Destination: B3 Item: Title: Intron-rich genes with many splice forms are protected against eccDNA formation Destination: B4 Item: Title: Discussion Destination: A2 Item: Title: Methods Destination: A3 Children: Item: Title: Ethics Destination: B5 Item: Title: Mice Destination: B6 Item: Title: White blood cell quantification Destination: B7 Item: Title: Purification of eccDNA Destination: B8 Children: Item: Title: DNA isolation and genome quantification Destination: C1 Item: Title: Removal of linear DNA Destination: C2 Item: Title: Removal of mitochondrial DNA Destination: C3 Item: Title: Amplification of exonuclease-resistant DNA Destination: C4 Item: Title: Internal plasmid controls Destination: C5 Item: Title: Sequencing and eccDNA identification Destination: B9 Item: Title: Semi-quantitative assessment of eccDNA number Destination: B10 Item: Title: Genomic annotation of eccDNA Destination: B11 Item: Title: RNA isolation and sequencing Destination: B12 Item: Title: RNA-seq data processing Destination: B13 Item: Title: Euclidean distance calculation Destination: B14 Item: Title: Sørensens-Dice similarity Destination: B15 Item: Title: Data regression and fitting Destination: B16 Item: Title: Random dataset generation Destination: B17 Item: Title: Multi-association analyses Destination: B18 Item: Title: Gene ontology enrichment Destination: B19 Item: Title: Reporting summary Destination: B20 Item: Title: Data availability Destination: M1 Item: Title: Code availability Destination: M2 Item: Title: References Destination: 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