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Articles 42 records found  beginprevious28 - 37next  jump to record: Search took 0.00 seconds. 
28.
12 p, 2.0 MB Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers / Cabrera, Antonio (The Ohio State University. Department of Horticulture and Crop Science) ; Kozik, Alex (University of California. Genome Center and Department of Plant Sciences) ; Howad, Werner (Institut de Recerca i Tecnologia Agroalimentàries) ; Arús i Gorina, Pere (Institut de Recerca i Tecnologia Agroalimentàries) ; Iezzoni, Amy F.. (Michigan State University. Department of Horticulture) ; Van der Knaap, Esther (The Ohio State University. Department of Horticulture and Crop Science)
Background: Detailed comparative genome analyses within the economically important Rosaceae family have not been conducted. This is largely due to the lack of conserved gene-based molecular markers that are transferable among the important crop genera within the family [e. [...]
2009 - 10.1186/1471-2164-10-562
BMC genomics, Vol. 10 (November 2009) , art. 562  
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29.
17 p, 1.8 MB Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes / Jung, Sook (Clemson University. Department of Genetics and Biochemistry) ; Main, Dorrie (Washington State University. Department of Horticulture and Landscape Architecture) ; Staton, Margaret (Clemson University. Department of Genetics and Biochemistry) ; Cho, Ilhyung (Department of Computer Science. Saginaw Valley State University) ; Zhebentyayeva, Tatyana (Clemson University. Department of Genetics and Biochemistry) ; Arús i Gorina, Pere (Institut de Recerca i Tecnologia Agroalimentàries) ; Abbott, Albert G. (Clemson University. Department of Genetics and Biochemistry)
Background: Due to the lack of availability of large genomic sequences for peach or other Prunus species, the degree of synteny conservation between the Prunus species and Arabidopsis has not been systematically assessed. [...]
2006 - 10.1186/1471-2164-7-81
BMC genomics, Vol. 7 (April 2006) , art. 81  
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30.
17 p, 525.9 KB MELOGEN : An EST database for melon functional genomics / Gonzalez-Ibeas, Daniel (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ; Blanca, José (Instituto de Conservación y Mejora de la Agrodiversidad Valenciana . Departamento de Biotecnología) ; Roig, Cristina (Instituto de Conservación y Mejora de la Agrodiversidad Valenciana . Departamento de Biotecnología) ; González To, Mireia (Centre de Recerca en Agrigenòmica) ; Picó, Belén (Instituto de Conservación y Mejora de la Agrodiversidad Valenciana . Departamento de Biotecnología) ; Truniger, Verónica (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ; Gómez, Pedro (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ; Deleu, Wim (Centre de Recerca en Agrigenòmica) ; Caño Delgado, Ana I. (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Nuez, Fernando (Instituto de Conservación y Mejora de la Agrodiversidad Valenciana . Departamento de Biotecnología) ; Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ; Puigdomènech, Pere, 1948- (Centre de Recerca en Agrigenòmica) ; Aranda, Miguel A. (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal)
Background: Melon (Cucumis melo L. ) is one of the most important fleshy fruits for fresh consumption. Despite this, few genomic resources exist for this species. To facilitate the discovery of genes involved in essential traits, such as fruit development, fruit maturation and disease resistance, and to speed up the process of breeding new and better adapted melon varieties, we have produced a large collection of expressed sequence tags (ESTs) from eight normalized cDNA libraries from different tissues in different physiological conditions. [...]
2007 - 10.1186/1471-2164-8-306
BMC genomics, Vol. 8 (September 2007) , art. 306  
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31.
50 p, 962.3 KB Transposons played a major role in the diversification between the closely related almond and peach genomes : Results from the almond genome sequence / Alioto, Tyler Scott (Centre de Regulació Genòmica) ; Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ; Bardil, Amélie (Centre de Recerca en Agrigenòmica) ; Barteri, Fabio (Centre de Recerca en Agrigenòmica) ; Castanera, Raúl (Centre de Recerca en Agrigenòmica) ; Cruz, Fernando (Centre de Regulació Genòmica) ; Dhingra, Amit (Washington State University. Department of Horticulture) ; Duval, Henri (Institut National de la Recherche Agronomique (França)) ; Fernández i Martí, Angel (University of California) ; Frias, Leonor (Centre de Regulació Genòmica) ; Galán, Beatriz (Consejo Superior de Investigaciones Científicas) ; García, José Luis (Consejo Superior de Investigaciones Científicas) ; Howad, Werner (Centre de Recerca en Agrigenòmica) ; Gómez-Garrido, Jessica (Centre de Regulació Genòmica) ; Gut, Marta (Centre de Regulació Genòmica) ; Julca, Irene (Centre de Regulació Genòmica) ; Morata, Jordi (Centre de Recerca en Agrigenòmica) ; Puigdomènech, Pere, 1948- (Centre de Recerca en Agrigenòmica) ; Ribeca, Paolo (Centre de Regulació Genòmica) ; Rubio Cabetas, María José (Centro de Investigación y Tecnología Agroalimentaria de Aragón) ; Vlasova, Anna (Centre de Regulació Genòmica) ; Wirthensohn, Michelle (The University of Adelaide. School of Agriculture, Food and Wine) ; Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ; Gabaldón, Toni (Centre de Regulació Genòmica) ; Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
We sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short and long-read sequencing. We obtained a genome assembly totaling 227. 6 Mb of the estimated 238 Mb almond genome size, of which 91% is anchored to eight pseudomolecules corresponding to its haploid chromosome complement, and annotated 27,969 protein-coding genes and 6,747 non-coding transcripts. [...]
2020 - 10.1111/tpj.14538
The Plant journal, Vol. 101, Issue 2 (January 2020) , p. 455-472  
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32.
14 p, 1.3 MB An integrated approach for increasing breeding efficiency in apple and peach in Europe / Laurens, Francois (Institut National de la Recherche Agronomique (França)) ; Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Bassi, Daniele (Università degli Studi di Milano) ; Bink, Marco (Wageningen University and Research. Biometris) ; Bonany, Joan (Institut de Recerca i Tecnologia Agroalimentàries) ; Caprera, Andrea (Parco Tecnologico Padano) ; Corelli-Grappadelli, Luca (Università di Bologna. Dipartimento di Scienze Agrarie) ; Costes, Evelyne (Institut National de la Recherche Agronomique (França)) ; Durel, Charles-Eric (Institut National de la Recherche Agronomique (França)) ; Mauroux, Jehan-Baptiste (Institut National de la Recherche Agronomique (França)) ; Muranty, Hélène (Institut National de la Recherche Agronomique (França)) ; Nazzicari, Nelson (Parco Tecnologico Padano) ; Pascal, Thierry (Institut National de la Recherche Agronomique (França)) ; Patocchi, Andrea (Agroscope. Research Division Plant Breeding (Switzerland)) ; Peil, Andreas (Julius Kühn-Institute Research) ; Quilot-Turion, Bénédicte (Institut National de la Recherche Agronomique (França)) ; Rossini, Laura (Parco Tecnologico Padano-) ; Stella, Alessandra (Parco Tecnologico Padano-) ; Troggio, Michela (Fondazione Edmund Mach. Research and Innovation Center) ; Velasco, Riccardo (Fondazione Edmund Mach. Research and Innovation Center) ; van de Weg, Eric (Wageningen University and Research)
Despite the availability of whole genome sequences of apple and peach, there has been a considerable gap between genomics and breeding. To bridge the gap, the European Union funded the FruitBreedomics project (March 2011 to August 2015) involving 28 research institutes and private companies. [...]
2018 - 10.1038/s41438-018-0016-3
Horticulture research, Vol. 5 (March 2018) , art. 11  
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33.
12 p, 2.3 MB Genotyping by sequencing in almond : SNP discovery, linkage mapping, and marker sesign / Goonetilleke, Shashi N. (The University of Adelaide. School of Agriculture, Food and Wine) ; March, Timothy J. (The University of Adelaide. School of Agriculture, Food and Wine) ; Wirthensohn, Michelle (The University of Adelaide. School of Agriculture, Food and Wine) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Walker, Amanda R. (The University of Adelaide. School of Agriculture, Food and Wine) ; Mather, Diane E. (The University of Adelaide. School of Agriculture, Food and Wine)
In crop plant genetics, linkage maps provide the basis for the mapping of loci that affect important traits and for the selection of markers to be applied in crop improvement. In outcrossing species such as almond (Prunus dulcis Mill. [...]
2017 - 10.1534/g3.117.300376
G3, Vol. 8, issue 1 (Jan. 2018) , p. 161-172  
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34.
11 p, 2.5 MB A deletion affecting an LRR-RLK gene co-segregates with the fruit flat shape trait in peach / López-Girona, Elena (Institut de Recerca i Tecnologia Agroalimentàries) ; Zhang, Yu (Centre de Recerca en Agrigenòmica) ; Eduardo, Iban (Institut de Recerca i Tecnologia Agroalimentàries) ; Hernández Mora, José R. (Institut de Recerca i Tecnologia Agroalimentàries) ; Alexiou, Konstantinos G. (Institut de Recerca i Tecnologia Agroalimentàries) ; Arús i Gorina, Pere (Institut de Recerca i Tecnologia Agroalimentàries) ; Aranzana, Maria José (Institut de Recerca i Tecnologia Agroalimentàries)
In peach, the flat phenotype is caused by a partially dominant allele in heterozygosis (Ss), fruits from homozygous trees (SS) abort a few weeks after fruit setting. Previous research has identified a SSR marker (UDP98-412) highly associated with the trait, found suitable for marker assisted selection (MAS). [...]
2017 - 10.1038/s41598-017-07022-0
Scientific reports, Vol. 7, (July 2017) , art. 6714  
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35.
8 p, 9.9 MB High-density mapping suggests cytoplasmic male sterility with two restorer genes in almond × peach progenies / Donoso Contreras, José M. (Centre de Recerca en Agrigenòmica) ; Eduardo, Iban (Centre de Recerca en Agrigenòmica) ; Picañol, Roger (Centre de Recerca en Agrigenòmica) ; Batlle, Ignasi (Centre de Recerca en Agrigenòmica) ; Howad, Werner (Centre de Recerca en Agrigenòmica) ; Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
Peach (Prunus persica) and almond (Prunus dulcis) are two sexually compatible species that produce fertile offspring. Almond, a highly polymorphic species, is a potential source of new genes for peach that has a strongly eroded gene pool. [...]
2015 - 10.1038/hortres.2015.16
Horticulture research, Vol. 2 (May 2015) , art. 15016  
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36.
12 p, 490.8 KB Synteny conservation between two distantly-related Rosaceae genomes : Prunus (the stone fruits) and Fragaria (the strawberry) / Vilanova, Santiago (Centre de Recerca en Agrigenòmica) ; Sargent, Daniel J. (East Malling Research) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Monfort, Amparo (Centre de Recerca en Agrigenòmica)
BACKGROUND: the Rosaceae encompass a large number of economically-important diploid and polyploid fruit and ornamental species in many different genera. The basic chromosome numbers of these genera are x = 7, 8 and 9 and all have compact and relatively similar genome sizes. [...]
2008 - 10.1186/1471-2229-8-67
BMC plant biology, Vol. 8 (2008) , art. 67  
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37.
13 p, 1.2 MB Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm / Verde, Ignazio (Centro di Ricerca per la Frutticoltura (Roma)) ; Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ; Scalabrin, Simone (Istituto di Genomica Applicata) ; Gilmore, Barbara (United States Department of Agriculture. National Clonal Germplasm Repository) ; Lawley, Cynthia T. (Illumina Inc. (California)) ; Gasic, Ksenija (Clemson University. School of Agricultural, Forest and Environmental Sciences) ; Micheletti, Diego (Centre de Recerca en Agrigenòmica) ; Rosyara, Umesh R. (Michigan State University. Department of Horticulture) ; Cattonaro, Federica (Istituto di Genomica Applicata) ; Vendramin, Elisa (Centro di Ricerca per la Frutticoltura (Roma)) ; Main, Dorrie (Washington State University. Department of Horticulture & Landscape Architecture) ; Aramini, Valeria (Centro di Ricerca per la Frutticoltura (Roma)) ; Blas, Andrea L. (Centre de Recerca en Agrigenòmica) ; Mockler, Todd C. (The Donald Danforth Plant Science Center) ; Bryant, Douglas W. (The Donald Danforth Plant Science Center) ; Wilhelm, Larry (Oregon Health Sciences University) ; Troggio, Michela (The Istituto Agrario di San Michele all'Adige) ; Sosinski, Bryon (North Carolina State University. Department of Horticultural Science) ; Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Morgante, Michele (Istituto di Genomica Applicata) ; Peace, Cameron (Washington State University. Department of Horticulture & Landscape Architecture)
Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to enable molecular breeding efforts such as genome wide association studies, fine mapping, genomic selection and marker-assisted selection in peach [Prunus persica (L. [...]
The almost 7,000 SNPs verified as polymorphic through extensive empirical evaluation represent an excellent source of markers for future studies in genetic relatedness, genetic mapping, and dissecting the genetic architecture of complex agricultural traits. [...]
2012 - 10.1371/journal.pone.0035668
PloS one, Vol. 7, issue 4 (April 2012) , e35668  
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