Published articles

Published articles 9 records found  Search took 0.03 seconds. 
1.
17 p, 2.2 MB A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing / Saint John, Elizabeth P. (454 Life Sciences (Brandford, Estats Units d'Amèrica)) ; Simen, Birgitte B. (454 Life Sciences (Brandford, Estats Units d'Amèrica)) ; Turenchalk, Gregory S. (454 Life Sciences (Brandford, Estats Units d'Amèrica)) ; Braverman, Michael S. (454 Life Sciences (Brandford, Estats Units d'Amèrica)) ; Abbate, Isabella (National Institute for Infectious Diseases (Roma, Itàlia)) ; Aerssens, Jeroen (Janssen Infectious Diseases (Beerse, Bèlgica)) ; Bouchez, Olivier (Plateforme Génomique Toulouse/Laboratoire Génétique Cellulaire (Toulouse, França)) ; Gabriel, Christian (Blutzentrale Linz (Àustria)) ; Izopet, Jacques (INSERM U56 (Toulouse, França)) ; Meixenberger, Karolin (Robert Koch-Institute (Berlin, Alemanya)) ; Di Giallonardo, Francesca (University of Zurich) ; Schlapbach, Ralph (University of Zurich) ; Paredes, Roger (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ; Sakwa, James (Technology Innovation Agency-National Genomics Platform (Durban, Sud-àfrica)) ; Schmitz-Agheguian, Gudrun G. (Roche Applied Science (Penzberg, Alemanya)) ; Thielen, Alexander (Institute of Immunology and Genetics (Kaiserslautern, Alemanya)) ; Victor, Martin (Roche Applied Science (Penzberg, Alemanya)) ; Metzner, Karin J. (University of Zurich) ; Däumer, Martin P. (Institute of Immunology and Genetics (Kaiserslautern, Alemanya)) ; 454 HIV-1 Alpha Study Group
Ultra deep sequencing is of increasing use not only in research but also in diagnostics. For implementation of ultra deep sequencing assays in clinical laboratories for routine diagnostics, intra- and inter-laboratory testing are of the utmost importance. [...]
2016 - 10.1371/journal.pone.0146687
PloS one, Vol. 11 Núm. 1 (January 2016)  
2.
19 p, 1.2 MB Identification of Immunogenic Cytotoxic T Lymphocyte Epitopes Containing Drug Resistance Mutations in Antiretroviral Treatment-Naïve HIV-Infected Individuals / Blanco Heredia, Juan (Instituto Nacional de Enfermedades Respiratorias (México)) ; Lecanda, Aarón (Instituto Nacional de Enfermedades Respiratorias (México)) ; Valenzuela Ponce, Humberto (Instituto Nacional de Enfermedades Respiratorias (México)) ; Brander Silva, Christian (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ; Ávila Ríos, Santiago (Instituto Nacional de Enfermedades Respiratorias (México)) ; Reyes Terán, Gustavo (Instituto Nacional de Enfermedades Respiratorias (México))
Background: therapeutic HIV vaccines may prove helpful to intensify antiretroviral treatment (ART) efficacy and may be an integral part of future cure strategies. Methods: we examined IFN-gamma ELISpot responses to a panel of 218 HIV clade B consensus-based HIV protease-reverse transcriptase peptides, designed to mimic previously described and predicted cytotoxic T lymphocyte epitopes overlapping drug resistance (DR) positions, that either included the consensus sequence or the DR variant sequence, in 49 ART-naïve HIV-infected individuals. [...]
2016 - 10.1371/journal.pone.0147571
PloS one, Vol. 11 Núm. 1 (January 2016)  
3.
9 p, 190.7 KB Predictors of severe sepsis among patients hospitalized for community-acquired pneumonia / Montull Veiga, Beatriz (Hospital Universitario y Politécnico La Fe (València, País Valencià)) ; Menéndez Villanueva, Rosario (Hospital Universitario y Politécnico La Fe (València, País Valencià)) ; Torres, Antoni (Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS)) ; Reyes Calzada, Soledad María (Hospital Universitario y Politécnico La Fe (València, País Valencià)) ; Méndez, Raúl (Hospital Universitario y Politécnico La Fe (València, País Valencià)) ; Zalacaín, Rafael (Hospital Universitario Cruces (Barakaldo, Biscaia)) ; Capelastegui, Alberto (Hospital de Galdakao (Usansolo, Biscaia)) ; Rajas, Olga (Hospital Universitario de la Princesa (Madrid)) ; Borderías, Luis (Hospital San Jorge (Osca, Aragó)) ; Martín Villasclaras, Juan (Hospital Regional Universitario Carlos Haya (Málaga)) ; Bello, Salvador (Hospital Universitario Miguel Servet (Zaragoza)) ; Alfageme, Inmaculada (Hospital de Valme (Sevilla)) ; Rodríguez de Castro, Felipe (Hospital Universitario de Gran Canaria) ; Rello, Jordi (Hospital Joan XXIII (Tarragona)) ; Molinos, Luis (Hospital Universitario Central de Asturias (Oviedo)) ; Ruiz Manzano, Juan (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol)
Background: Severe sepsis, may be present on hospital arrival in approximately one-third of patients with community-acquired pneumonia (CAP). Objective: To determine the host characteristics and micro-organisms associated with severe sepsis in patients hospitalized with CAP. [...]
2016 - 10.1371/journal.pone.0145929
PloS one, Vol. 11 Núm. 1 (January 2016)  
4.
12 p, 565.3 KB Impact of Triple Therapy in Elderly Patients with Atrial Fibrillation Undergoing Percutaneous Coronary Intervention / Sambola, Antonia (Hospital Universitari Vall d'Hebron) ; Mutuberría Urdániz, María (Hospital Universitari Vall d'Hebron) ; García Del Blanco, Bruno (Hospital Universitari Vall d'Hebron) ; Alonso, Albert (Hospital Universitari Vall d'Hebron) ; Barrabés Riu, José Antonio (Hospital Universitari Vall d'Hebron) ; Bueno, Héctor (Hospital General Universitario Gregorio Marañón) ; Alfonso, Fernando (Hospital Clínico San Carlos (Madrid)) ; Cequier, Ángel (Hospital Universitari de Bellvitge) ; Zueco, Javier (Hospital Universitario Marqués de Valdecilla (Santander)) ; Rodríguez Leor, Oriol (Institut Germans Trias i Pujol. Hospital Universitari Germans Trias i Pujol) ; Tornos Mas, Pilar (Hospital Universitari Vall d'Hebron) ; García Dorado, David (Hospital Universitari Vall d'Hebron)
Background and purpose: Selecting an ideal antithrombotic therapy for elderly patients with atrial fibrillation (AF) undergoing percutaneous coronary intervention (PCI) can be challenging since they have a higher thromboembolic and bleeding risk than younger patients. [...]
2016 - 10.1371/journal.pone.0147245
PloS one, Vol. 11 Núm. 1 (January 2016)  
5.
11 p, 203.3 KB Mutations related to Antiretroviral Resistance identified by ultra-deep sequencing in HIV-1 infected children under Structured Interruptions of HAART / Vázquez Guillén, José Manuel (Universidad Autónoma de Nuevo León (Mèxic)) ; Palacios Saucedo, Gerardo C. (Instituto Mexicano del Seguro Social) ; Rivera Morales, Lydia G. (Universidad Autónoma de Nuevo León (Mèxic)) ; García Campos, Jorge (Instituto Mexicano del Seguro Social) ; Ortiz López, Rocío (Universidad Autónoma de Nuevo León (Mèxic)) ; Noguera Julián, Marc (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ; Paredes, Roger (Institut Germans Trias i Pujol. Institut de Recerca de la Sida IrsiCaixa) ; Vielma Ramírez, Herlinda J. (Universidad Autónoma de Nuevo León (Mèxic)) ; Ramírez, Teresa (Laboratorio Estatal de Salud Pública del Estado de Nuevo León (Mèxic)) ; Chávez García, Marcelino (Instituto Mexicano del Seguro Social) ; López Guillén, Paulo (Instituto Mexicano del Seguro Social) ; Briones Lara, Evangelina (Instituto Mexicano del Seguro Social) ; Sánchez Sánchez, Luz M. (Instituto Mexicano del Seguro Social) ; Vázquez Martínez, Carlos A. (Instituto Mexicano del Seguro Social) ; Rodríguez Padilla, Cristina (Universidad Autónoma de Nuevo León (Mèxic))
Although Structured Treatment Interruptions (STI) are currently not considered an alternative strategy for antiretroviral treatment, their true benefits and limitations have not been fully established. [...]
2016 - 10.1371/journal.pone.0147591
PloS one, Vol. 11 Núm. 1 (January 2016)  
6.
20 p, 1.8 MB Cell to Cell Variability of Radiation-Induced Foci : relation between Observed Damage and Energy Deposition / Gruel, Gaëtan (Institut de Radioprotection et de Sûreté Nucléaire (Fontenay aux Roses, França). Department of Human Health Radiation Protection) ; Villagrasa, Carmen (Institut de Radioprotection et de Sûreté Nucléaire (Fontenay aux Roses, França). Department of Human Health Radiation Protection) ; Voisin, Pascale (Institut de Radioprotection et de Sûreté Nucléaire (Fontenay aux Roses, França). Department of Human Health Radiation Protection) ; Clairand, Isabelle (Institut de Radioprotection et de Sûreté Nucléaire (Fontenay aux Roses, França). Department of Human Health Radiation Protection) ; Benderitter, Marc (Institut de Radioprotection et de Sûreté Nucléaire (Fontenay aux Roses, França). Department of Human Health Radiation Protection) ; Bottollier-Depois, Jean-François (Institut de Radioprotection et de Sûreté Nucléaire (Fontenay aux Roses, França). Department of Human Health Radiation Protection) ; Barquinero, J. F. (Joan Francesc) (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia)
Most studies that aim to understand the interactions between different types of photon radiation and cellular DNA assume homogeneous cell irradiation, with all cells receiving the same amount of energy. [...]
2016 - 10.1371/journal.pone.0145786
PLoS one, Vol. 11 Núm. 1 (January 2016) , p. 1-20  
7.
24 p, 1.7 MB Integration and Validation of the GenomeScale Metabolic Models of Pichia pastoris : a Comprehensive Update of Protein Glycosylation Pathways, Lipid and Energy Metabolism / Tomàs Gamisans, Màrius (Universitat Autònoma de Barcelona. Departament d'Enginyeria Química, Biològica i Ambiental) ; Ferrer, Pau (Universitat Autònoma de Barcelona. Departament d'Enginyeria Química, Biològica i Ambiental) ; Albiol i Sala, Joan (Universitat Autònoma de Barcelona. Departament d'Enginyeria Química, Biològica i Ambiental)
Motivation: Genome-scale metabolic models (GEMs) are tools that allow predicting a phenotype from a genotype under certain environmental conditions. GEMs have been developed in the last ten years for a broad range of organisms, and are used for multiple purposes such as discovering new properties of metabolic networks, predicting new targets for metabolic engineering, as well as optimizing the cultivation conditions for biochemicals or recombinant protein production. [...]
2016 - 10.1371/journal.pone.0148031
PloS one, Vol. 11 Núm. 1 (January 2016) , p. 1-24  
8.
18 p, 280.9 KB Schooling, local knowledge and working memory : a study among three contemporary hunter-gatherer societies / Reyes-García, Victòria (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ; Pyhälä, Aili (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ; Díaz Reviriego, Isabel (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ; Duda, Romain (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ; Fernández-Llamazares, Álvaro (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ; Gallois, Sandrine (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ; Guèze, Maximilien (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals) ; Napitupulu, Lucentezza (Universitat Autònoma de Barcelona. Institut de Ciència i Tecnologia Ambientals)
Researchers have analysed whether school and local knowledge complement or substitute each other, but have paid less attention to whether those two learning models use different cognitive strategies. [...]
2016 - 10.1371/journal.pone.0145265
Plos One, Vol. 11, issue 1 (January 2016) , art. 0145265  
9.
22 p, 3.2 MB SOS system induction inhibits the assembly of chemoreceptor signaling clusters in Salmonella enterica / Irazoki Sanchez, Oihane (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Mayola Coromina, Albert (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Campoy Sánchez, Susana (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ; Barbé García, Jordi (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
Swarming, a flagellar-driven multicellular form of motility, is associated with bacterial virulence and increased antibiotic resistance. In this work we demonstrate that activation of the SOS response reversibly inhibits swarming motility by preventing the assembly of chemoreceptor-signaling polar arrays. [...]
2016 - 10.1371/journal.pone.0146685
PLos one, Vol. 11 Núm. 1 (Gener 2016) , p. e0146685  

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