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1.
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9 p, 334.7 KB |
Identification of three single nucleotide polymorphisms in the chicken insulin-like growth factor 1 and 2 genes and their associations with growth and feeding traits
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Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jiménez, N. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Villalba, D. (Universitat de LLeida. Departamanent de Producció Animal) ;
Tor, M. (Universitat de LLeida. Departamanent de Producció Animal) ;
Molina, E. (Universitat de LLeida. Departamanent de Producció Animal) ;
Cubiló, D. (Universitat de LLeida. Departamanent de Producció Animal) ;
Marcos, C. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Francesch, A. (Centre Mas Bové. Unitat de Genètica Avícola) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Estany, J. (Universitat de LLeida. Departamanent de Producció Animal)
The chicken insulin-like growth factor (IGF)1 and IGF2 genes have been partially sequenced in six individuals of each of two chicken strains of the Black Penedesenca breed (PN and MN). These two strains are genetically diverse for growth traits. [...]
2003 -  10.1093/ps/82.10.1485
Poultry Science, Vol. 82 Núm. 10 (october 2003) , p. 1485-1493
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2.
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Modeling microRNA-driven post-transcriptional regulation using exon-intron split analysis in pigs
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Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Cirera, Susanna (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Zingaretti, Laura M. (Universidad Nacional de Villa María) ;
Jacobsen, Mette Juul (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries) ;
Jørgensen, Claus B. (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Cardoso, Tainã Figueiredo (Institut de Recerca i Tecnologia Agroalimentàries) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
The contribution of microRNAs (miRNAs) to mRNA post-transcriptional regulation has often been explored by the post hoc selection of downregulated genes and determining whether they harbor binding sites for miRNAs of interest. [...]
2022 - 10.1111/age.13238
Animal Genetics, Vol. 53, Issue 5 (October 2022) , p. 613-626
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3.
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17 p, 2.4 MB |
Evolution of inbreeding : a gaze into five Italian beef cattle breeds history
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Rovelli, Giacomo (Centre de Recerca en Agrigenòmica) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Sbarra, Fiorella (National Association of Italian Beef-Cattle Breeders) ;
Quaglia, Andrea (National Association of Italian Beef-Cattle Breeders) ;
Sarti, Francesca Maria (University of Perugia. Department of Agricultural, Food and Environmental Sciences) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Lasagna, Emiliano (University of Perugia. Department of Agricultural, Food and Environmental Sciences)
In the last decades, intensive selection programs have led to sustained increases of inbreeding in dairy cattle, a feature that might have adverse consequences on the viability and phenotypic performance of their offspring. [...]
2021 - 10.7717/peerj.12049
PeerJ, Vol. 9 (september 2021)
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4.
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17 p, 1.5 MB |
Assessing the levels of intraspecific admixture and interspecific hybridization in Iberian wild goats (Capra pyrenaica)
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Cardoso, Tainã Figueiredo (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Luigi Sierra, Maria Gracia (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ;
Noce, Antonia (Leibniz-Institute for Farm Animal Biology) ;
Mármol-Sánchez, Emilio (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
García-González, Ricardo (Instituto Pirenaico de Ecología) ;
Fernández-Arias, Alberto (Gobierno de Aragón) ;
Alabart, José Luis (Gobierno de Aragón) ;
López Olvera, Jorge R (Universitat Autònoma de Barcelona. Servei d'Ecopatologia de Fauna Salvatge) ;
Mentaberre García, Gregorio (Universitat de Lleida. Departament de Ciència Animal) ;
Granados Torres, José Enrique (Espacio Natural Sierra Nevada) ;
Cardells-Peris, Jesús (Universidad CEU Cardenal Herrera) ;
Molina, Antonio (Universidad de Córdoba) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Iberian wild goats (Capra pyrenaica, also known as Iberian ibex, Spanish ibex, and Spanish wild goat) underwent strong genetic bottlenecks during the 19 th and 20 th centuries due to overhunting and habitat destruction. [...]
2021 - 10.1111/eva.13299
Evolutionary applications, Vol. 14 (september 2021) , p. 2618-2634
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5.
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26 p, 12.8 MB |
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci
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Lv, Feng-Hua (China Agricultural University. College of Animal Science and Technology) ;
Cao, Yin-Hong (University of Chinese Academy of Sciences . College of Life Sciences) ;
Liu, Guang-Jian (Novogene Bioinformatics Institute) ;
Luo, Ling-Yun (China Agricultural University. College of Animal Science and Technology) ;
Lu, Ran (China Agricultural University. College of Animal Science and Technology) ;
Liu, Ming-Jun (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Li, Wen-Rong (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Zhou, Ping (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wang, Xin-Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Shen, Min (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Gao, Lei (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Jing-Quan (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Yong-Lin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Liu, Chang-Bin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wan, Peng-Cheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Zhang, Yun-Sheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Pi, Wen-Hui (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Ren, Yan-Ling (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Shen, Zhi-Qiang (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Wang, Feng (Nanjing Agricultural University. Institute of Sheep and Goat Science) ;
Wang, Yu-Tao (Kashi University. College of Life and Geographic Sciences) ;
Li, Jin-Quan (Inner Mongolia Agricultural University. College of Animal Science) ;
Salehian-Dehkordi, Hosein (University of Chinese Academy of Sciences. College of Life Sciences) ;
Hehua, Eer (Ningxia Academy of Agriculture and Forestry Sciences. Grass-Feeding Livestock Engineering Technology Research Center) ;
Liu, Yong-Gang (Yunnan Agricultural University. College of Animal Science and Technology) ;
Chen, Jian-Fei (China Agricultural University. College of Animal Science and Technology) ;
Wang, Jian-Kui (China Agricultural University. College of Animal Science and Technology) ;
Deng, Xue-Mei (China Agricultural University. College of Animal Science and Technology) ;
Esmailizadeh, Ali (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Dehghani-Qanatqestani, Mostafa (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Charati, Hadi (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Nosrati, Maryam (Payame Noor University. Department of Agriculture) ;
Štěpánek, Ondřej (State Veterinary Institute Jihlava. Department of Virology) ;
Rushdi, Hossam E (Cairo University. Department of Animal Production) ;
Olsaker, Ingrid (Norwegian University of Life Sciences. Department of Preclinical Sciences and Pathology) ;
Curik, Ino (University of Zagreb. Department of Animal Science) ;
Gorkhali, Neena A (Nepal Agriculture Research Council. Animal Breeding Division, National Animal Science Institute) ;
Paiva, Samuel R (Embrapa Recursos Genéticos e Biotecnologia) ;
Caetano, Alexandre R (Embrapa Recursos Genéticos e Biotecnologia) ;
Ciani, Elena (Università degli Studi di Bari. Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Weimann, Christina (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Erhardt, Georg (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Amane, Agraw (International Livestock Research Institute) ;
Mwacharo, Joram M (The Roslin Institute Building) ;
Han, Jian-Lin (International Livestock Research Institute (Nairobi, Kènia)) ;
Hanotte, Olivier (University of Nottingham. School of Life Sciences) ;
Periasamy, Kathiravan (International Atomic Energy Agency. Animal Production and Health Laboratory) ;
Johansson, Anna M (Swedish University of Agricultural Sciences. Department of Animal Breeding and Genetics) ;
Hallsson, Jón H (Agricultural University of Iceland. Faculty of Natural Resources and Environmental Sciences) ;
Kantanen, Juha (Natural Resources Institute Finland. Production Systems) ;
Coltman, David W (University of Alberta. Department of Biological Sciences) ;
Bruford, Michael W (Cardiff University. Sustainable Places Research Institute) ;
Lenstra, Johannes A (Utrecht University. Faculty of Veterinary Medicine) ;
Li, Meng-Hua (China Agricultural University. College of Animal Science and Technology)
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the backbone of molecular breeding, but their genome landscapes remain understudied. Here, we present a comprehensive genome resource for wild ovine species, landraces and improved breeds of domestic sheep, comprising high-coverage (∼16. [...]
2021 - 10.1093/molbev/msab353
Molecular biology and evolution, Vol. 39 (december 2021)
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6.
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14 p, 2.9 MB |
VarGoats project : a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity
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Denoyelle, Laure (Université de Toulouse) ;
Talouarn, Estelle (Université de Toulouse) ;
Bardou, Philippe (Université de Toulouse) ;
Colli, Licia (Università Cattolica del Sacro Cuore. Dipartimento Di Scienze Animali, Della Nutrizione E Degli Alimenti) ;
Alberti, Adriana (Université Paris-Saclay) ;
Danchin Burge, Coralie (Institut de L'Elevage (Paris)) ;
Del Corvo, Marcello (Università Cattolica del Sacro Cuore. Dipartimento Di Scienze Animali, Della Nutrizione E Degli Alimenti) ;
Engelen, Stefan (Université Paris-Saclay) ;
Orvain, Céline (Université Paris-Saclay) ;
Palhière, Isabelle (Université de Toulouse) ;
Rupp, Rachel (Université de Toulouse) ;
Sarry, Julien (Université de Toulouse) ;
Salavati, Mazdak (University of Edinburgh) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Clark, Emily (University of Edinburgh) ;
Crepaldi, Paola (University of Milan. Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy) ;
Faraut, Thomas (Université de Toulouse) ;
Masiga, Clet Wandui (Tropical Institute of Development Innovations (TRIDI) (Uganda)) ;
Pompanon, François (Université Grenoble Alpes) ;
Rosen, Benjamin D. (USDA-ARS. Animal Genomics and Improvement Laboratory) ;
Stella, Alessandra (Istituto Di Biologia E Biotecnologia Agraria (Milan)) ;
Van Tassell, Curtis (USDA-ARS. Animal Genomics and Improvement Laboratory) ;
Tosser-Klopp, Gwenola (Université de Toulouse)
Since their domestication 10,500 years ago, goat populations with distinctive genetic backgrounds have adapted to a broad variety of environments and breeding conditions. The VarGoats project is an international 1000-genome resequencing program designed to understand the consequences of domestication and breeding on the genetic diversity of domestic goats and to elucidate how speciation and hybridization have modeled the genomes of a set of species representative of the genus Capra. [...]
2021 - 10.1186/s12711-021-00659-6
Genetics, selection, evolution, Vol. 53 (November 2021) , art. 86
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7.
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14 p, 3.2 MB |
Genomic patterns of homozygosity and inbreeding depression in Murciano-Granadina goats
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Fernández, Almudena (INIA. Departamento de Mejora Genética Animal) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Fernández Álvarez, Javier (Universidad de Córdoba. Departamento de Genética) ;
Landi, Vincenzo (University of Bari ''Aldo Moro". Department of Veterinary Medicine) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Saura, María (INIA. Departamento de Mejora Genética Animal) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Inbreeding depression can adversely affect traits related to fitness, reproduction and productive performance. Although current research suggests that inbreeding levels are generally low in most goat breeds, the impact of inbreeding depression on phenotypes of economic interest has only been investigated in a few studies based on genealogical data. [...]
2022 - 10.1186/s40104-022-00684-5
Journal of animal science and biotechnology, Vol. 13 (March 2022) , art. 35
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8.
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7 p, 2.0 MB |
Mitochondrial DNA diversity of the Sardinian local cattle stock
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Petretto, Elena (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Dettori, Maria Luisa (University of Sassari. Department of Veterinary Medicine) ;
Pazzola, Michele (University of Sassari. Department of Veterinary Medicine) ;
Manca, Fabio (University of Sassari. Department of Veterinary Medicine) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Vacca, Giuseppe Massimo (University of Sassari. Department of Veterinary Medicine)
The aim of this research was to characterize the genetic diversity of the Sarda (Sa, n = 131), Sardo Bruna (SB, n = 44) and Sardo Modicana (SM, n = 26) cattle breeds, reared in the island of Sardinia (Italy). [...]
2022 - 10.1038/s41598-022-06420-3
Scientific reports, Vol. 12 (February 2022) , art. 2486
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9.
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9 p, 3.2 MB |
An association analysis between a polymorphism in the SEC24A gene and lipid traits recorded in Duroc pigs
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Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
By regulating the expression of low-density lipoprotein receptors (LDLR), the SEC24A protein modulates the clearance of plasma cholesterol in mice. The whole-genome sequencing of five Duroc boars that sired a Duroc purebred experimental population (LIPGEN population, 350 individuals) revealed the segregation of one putative nonsense mutation located at the SEC24A (rs336401826, c. [...]
2021 - 10.1080/1828051X.2021.1951129
Italian journal of animal science, Vol. 20, Issue 1 (October 2021) , p. 1444-1451
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10.
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21 p, 2.2 MB |
Variability in porcine microRNA genes and its association with mRNA expression and lipid phenotypes
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Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Quintanilla, Raquel (Institute for Research and Technology in Food and Agriculture. Animal Breeding and Genetics Program) ;
Tonda, Raul (Centre de Regulació Genòmica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Mature microRNAs (miRNAs) play an important role in repressing the expression of a wide range of mRNAs. The presence of polymorphic sites in miRNA genes and their corresponding 3'UTR binding sites can disrupt canonical conserved miRNA-mRNA pairings, and thus modify gene expression patterns. [...]
2021 - 10.1186/s12711-021-00632-3
Genetics, selection, evolution, Vol. 53 (May 2021) , art. 43
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