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1.
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9 p, 3.2 MB |
An association analysis between a polymorphism in the SEC24A gene and lipid traits recorded in Duroc pigs
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Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Quintanilla, Raquel (Institut de Recerca i Tecnologia Agroalimentàries) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
By regulating the expression of low-density lipoprotein receptors (LDLR), the SEC24A protein modulates the clearance of plasma cholesterol in mice. The whole-genome sequencing of five Duroc boars that sired a Duroc purebred experimental population (LIPGEN population, 350 individuals) revealed the segregation of one putative nonsense mutation located at the SEC24A (rs336401826, c. [...]
2021 -  10.1080/1828051X.2021.1951129
Italian Journal of Animal Science, Vol. 20, Issue 1 (October 2021) , p. 1444-1451
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2.
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24 p, 2.8 MB |
Signatures of selection and environmental adaptation across the goat genome post-domestication
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Bertolini, Francesca (Technical University of Denmark. National Institute of Aquatic Resources) ;
Servin, Bertrand (GenPhySE) ;
Talenti, Andrea (Università degli Studi di Milano. Dipartimento di Medicina Veterinaria) ;
Rochat, Estelle (Ecole Polytechnique Fédérale de Lausanne) ;
Kim, Eui Soo (Recombinetics Inc) ;
Oget, Claire (GenPhySE) ;
Palhière, Isabelle (GenPhySE) ;
Crisà, Alessandra (Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Catillo, Gennaro (Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Steri, Roberto (Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Colli, Licia (Università Cattolica del S. Cuore) ;
Marras, Gabriele (Fondazione Parco Tecnologico Padano) ;
Milanesi, Marco (São Paulo State University. Department of Support, Production and Animal Health) ;
Nicolazzi, Ezequiel (Fondazione Parco Tecnologico Padano) ;
Rosen, Benjamin D. (Animal Genomics and Improvement Laboratory (USA)) ;
Van Tassell, Curtis P. (Animal Genomics and Improvement Laboratory (USA)) ;
Guldbrandtsen, Bernt (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Sonstegard, Tad S. (Recombinetics Inc) ;
Tosser-Klopp, Gwenola (GenPhySE) ;
Stella, Alessandra (Università Cattolica del S. Cuore) ;
Rothschild, Max F. (Iowa State University. Department of Animal Science) ;
Joost, Stéphane (Ecole Polytechnique Fédérale de Lausanne) ;
Crepaldi, Paola (Università degli Studi di Milano. Dipartimento di Medicina Veterinaria) ;
The AdaptMap consortium
Since goat was domesticated 10,000 years ago, many factors have contributed to the differentiation of goat breeds and these are classified mainly into two types: (i) adaptation to different breeding systems and/or purposes and (ii) adaptation to different environments. [...]
2018 - 10.1186/s12711-018-0421-y
Genetics, selection, evolution, Vol. 50 (November 2018) , art. 57
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3.
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Markers with low GenTrain scores can generate spurious signals in genome-wide scans for transmission ratio distortion
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Casellas Vidal, Joaquim (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Delgado, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Fernández Álvarez, Javier (Universidad de Córdoba. Departamento de Genética) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
2021 - 10.1111/age.13107
Animal Genetics, Vol. 52, Issue 5 (October 2021) , p. 779-781
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4.
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11 p, 1.8 MB |
Detecting the footprint of selection on the genomes of Murciano-Granadina goats
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Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Landi, Vicenzo (University of Bari "Aldo Moro") ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Fernández Álvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
Artificial selection is one of the major forces modifying the genetic composition of livestock populations. Identifying genes under selection could be useful to elucidate their impact on phenotypic variation. [...]
Wiley-Blackwell, 2021 - 10.1111/age.13113
Animal Genetics
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5.
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55 p, 2.5 MB |
A genome-wide association analysis for body, udder, and leg conformation traits recorded in Murciano-Granadina goats
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Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Landi, Vicenzo (University of Bari "Aldo Moro") ;
Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ;
Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Fernández Álvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Gómez-Carpio, Mayra (Universidad de Córdoba. Departamento de Genética) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Grup de Recerca en Remugants (G2R)) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Morphological traits are of great importance to dairy goat production given their effect on phenotypes of economic interest. However, their underlying genomic architecture has not yet been extensively characterized. [...]
2020 - 10.3168/jds.2020-18461
Journal of Dairy Science, Vol. 103, Issue 12 (December 2020) , p. 11605-11617
2 documents
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6.
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25 p, 927.2 KB |
Estimating the copy number of the agouti signaling protein (ASIP) gene in goat breeds with different color patterns
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Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Landi, Vicenzo (University of Bari "Aldo Moro") ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica)
The agouti signaling protein (ASIP) gene has a crucial role in pigmentation by encoding a protein that binds the melanocortin 1 receptor and stimulates the synthesis of pheomelanin rather than eumelanin. [...]
2021 - 10.1016/j.livsci.2021.104440
Livestock Science, Vol. 246 (April 2021) , art. 104440
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7.
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19 p, 1.5 MB |
Analyzing the genomic and transcriptomic architecture of milk traits in Murciano-Granadina goats
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Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Landi, Vicenzo (Universidad de Córdoba. Departamento de Genética) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ;
Mármol-Sánchez, Emilio (Centre de Recerca en Agrigenòmica) ;
Fernández Álvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
De La Torre Casañas, José Luis (Universitat Autònoma de Barcelona. Servei de Granges i Camps Experimentals) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
Background:In this study, we aimed to investigate the molecular basis of lactation as well as to identify the genetic factors that influence milk yield and composition in goats. To achieve these two goals, we have analyzed how the mRNA profile of the mammary gland changes in seven Murciano-Granadina goats at each of three different time points, i. [...]
2020 - 10.1186/s40104-020-00435-4
Journal of animal science and biotechnology, Vol. 11 (March 2020) , art. 35
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8.
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15 p, 4.1 MB |
Donkey genomes provide new insights into domestication and selection for coat color
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Wang, Changfa (Liaocheng University. Liaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding) ;
Li, Haijing (National Engineering Research Center for Gelatin-based Traditional Chinese Medicine) ;
Guo, Yu (BGI-Shenzhen) ;
Huang, Jinming (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Sun, Yan (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Min, Jiumeng (BGI-Shenzhen) ;
Wang, Jinpeng (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Fang, Xiaodong (BGI-Shenzhen) ;
Zhao, Zicheng (City University of Hong Kong. Department of Computer Science) ;
Wang, Shuai (City University of Hong Kong. Department of Computer Science) ;
Zhang, Yanlin (City University of Hong Kong. Department of Computer Science) ;
Liu, Qingfeng (BGI-Shenzhen) ;
Jiang, Qiang (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Wang, Xiuge (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Guo, Yijun (BGI-Shenzhen) ;
Yang, Chunhong (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Wang, Yinchao (National Engineering Research Center for Gelatin-based Traditional Chinese Medicine) ;
Tian, Fang (National Engineering Research Center for Gelatin-based Traditional Chinese Medicine) ;
Zhuang, Guilong (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Fan, Yanna (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Gao, Qican (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Li, Yuhua (Liaocheng University. Liaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding) ;
Ju, Zhihua (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Li, Jianbin (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Li, Rongling (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Hou, Minghai (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Yang, Guiwen (Shandong Normal University. College of Life Science) ;
Liu, Guiqin (Liaocheng University. Liaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding) ;
Liu, Wenqiang (Liaocheng University Liaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding.) ;
Guo, Jiao (BGI-Shenzhen) ;
Pan, Shanshan (BGI-Shenzhen) ;
Fan, Guangyi (BGI-Shenzhen) ;
Zhang, Wei (Shandong Academy of Agricultural Sciences. Dairy Cattle Research Center) ;
Zhang, Ruitao (Liaocheng University. Liaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding) ;
Yu, Jie (National Engineering Research Center for Gelatin-based Traditional Chinese Medicine) ;
Zhang, Xinhao (National Engineering Research Center for Gelatin-based Traditional Chinese Medicine) ;
Yin, Qi (BGI-Shenzhen) ;
Ji, Chuanliang (National Engineering Research Center for Gelatin-based Traditional Chinese Medicine) ;
Jin, Yuanchun (BGI-Shenzhen) ;
Yue, Guidong (BGI-Shenzhen) ;
Liu, Mei (Nanjing Normal University. Jiangsu Key Laboratory for Molecular and Medical Biotechnology) ;
Xu, Jiake (The University of Western Australia . School of Biomedical Sciences) ;
Liu, Shimin (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Noce, Antonia (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Wu, Dong-Dong (Chinese Academy of Sciences. Center for Excellence in Animal Evolution and Genetics) ;
Li, Shuaicheng (City University of Hong Kong. Department of Computer Science) ;
Zhou, Xiangshan (East China University of Science and Technology. State Key Laboratory of Bioreactor Engineering) ;
Zhong, Jifeng (Jiangsu Academy of Agricultural Sciences. Institute of Animal Science)
Current knowledge about the evolutionary history of donkeys is still incomplete due to the lack of archeological and whole-genome diversity data. To fill this gap, we have de novo assembled a chromosome-level reference genome of one male Dezhou donkey and analyzed the genomes of 126 domestic donkeys and seven wild asses. [...]
2020 - 10.1038/s41467-020-19813-7
Nature communications, Vol. 11 (December 2020) , art. 6014
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9.
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18 p, 3.8 MB |
Paternal origins and migratory episodes of domestic sheep
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Deng, Juan (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Xie, Xing-Long (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Wang, Dong-Feng (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Zhao, Chao (Hebei University. College of Life Science (China)) ;
Lv, Feng-Hua (China Agricultural University. College of Animal Science and Technology (China)) ;
Li, Xin (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Yang, Ji (China Agricultural University. College of Animal Science and Technology (China)) ;
Yu, Jia-Lin (Station for Breeding and Improvement of Animal and Poultry of Changshou District (China)) ;
Shen, Min (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Breeding (China)) ;
Gao, Lei (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Breeding (China)) ;
Yang, Jing-Quan (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Breeding (China)) ;
Liu, Ming-Jun (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center (China)) ;
Li, Wen-Rong (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center (China)) ;
Wang, Yu-Tao (Kashi University. College of Life and Geographic Sciences (China)) ;
Wang, Feng (Nanjing Agricultural University. Institute of Sheep and Goat Science (China)) ;
Li, Jin-Quan (Inner Mongolia Agricultural University. College of Animal Science (China)) ;
Hehua, EEr (Ningxia Academy of Agriculture and Forestry Sciences. Grass-Feeding Livestock Engineering Technology Research Center (China)) ;
Liu, Yong-Gang (Yunnan Agricultural University. College of Animal Science and Technology (China)) ;
Shen, Zhi-Qiang (Shandong Binzhou Academy of Animal Science and Veterinary Medicine (China)) ;
Ren, Yan-Ling (Shandong Binzhou Academy of Animal Science and Veterinary Medicine (China)) ;
Liu, Guang-Jian (Novogene Bioinformatics Institute (China)) ;
Chen, Ze-Hui (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Gorkhali, Neena A. (Nepal Agriculture Research Council. National Animal Science Institute. Animal Breeding Division (Nepal)) ;
Rushdi, Hossam E. (Cairo University. Department of Animal Production (Egypt)) ;
Salehian-Dehkordi, H. (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Esmailizadeh, Ali (Shahid Bahonar University of Kerman. Department of Animal Science (Iran)) ;
Nosrati, Maryam (Payame Noor University. Department of Agriculture (Iran)) ;
Paiva, Samuel R. (Embrapa Recursos Genéticos e Biotecnologia (Brazil)) ;
Caetano, Alexandre R. (Embrapa Recursos Genéticos e Biotecnologia (Brazil)) ;
Štěpánek, Ondřej (State Veterinary Institute Jihlava. Department of Virology (Czech Republic)) ;
Olsaker, Ingrid (Norwegian University of Life Sciences. Department of Preclinical Sciences and Pathology (Norway)) ;
Weimann, Christina (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics (Germany)) ;
Erhardt, Georg (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics (Germany)) ;
Curik, Ino (University of Zagreb. Department of Animal Science (Croatia)) ;
Kantanen, Juha (Natural Resources Institute Finland. Production Systems (Finland)) ;
Mwacharo, Joram M. (International Center for Agricultural Research in the Dry Areas (Ethiopia)) ;
Hanotte, Olivier (International Livestock Research Institute. LiveGene (Ethiopia)) ;
Bruford, Michael W. (Cardiff University. Sustainable Places Research Institute (UK)) ;
Ciani, Elena (Università degli Studi di Bari Aldo Moro. Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica (Italy)) ;
Periasamy, Kathiravan (International Atomic Energy Agency. Animal Production and Health Laboratory (Austria)) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Lenstra, Johannes A. (Utrecht University.Faculty of Veterinary Medicine (the Netherlands)) ;
Han, Jian-Lin (International Livestock Research Institute. Livestock Genetics Program (Kenya)) ;
Zhang, Hong-Ping (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province (China)) ;
Li, Li (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province (China)) ;
Li, Meng-Hua (China Agricultural University. College of Animal Science and Technology (China))
The domestication and subsequent global dispersal of livestock are crucial events in human history, but the migratory episodes during the history of livestock remain poorly documented [1-3]. Here, we first developed a set of 493 novel ovine SNPs of the male-specific region of Y chromosome (MSY) by genome mapping. [...]
2020 - 10.1016/j.cub.2020.07.077
Current Biology, Vol. 30, Issue 20 (October 2020) , p. 4085-4095
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10.
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10 p, 1.3 MB |
A genome-wide analysis of copy number variation in Murciano-Granadina goats
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Guan, Dailu (Centre de Recerca en Agrigenòmica) ;
Martinez, Amparo (Universidad de Córdoba. Departamento de Genética) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Landi, Vincenzo (Universidad de Córdoba. Departamento de Genética) ;
Luigi Sierra, Maria Gracia (Centre de Recerca en Agrigenòmica) ;
Fernández Álvarez, Javier (Asociación Nacional de Criadores de Caprino de Raza Murciano-Granadina) ;
Cabrera Pane, Betlem (Centre de Recerca en Agrigenòmica) ;
Delgado Bermejo, Juan Vicente (Universidad de Córdoba. Departamento de Genética) ;
Such i Martí, Francesc Xavier (Universitat Autònoma de Barcelona. Grup de Recerca en Remugants (G2R)) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Universitat Autònoma de Barcelona.
Departament de Ciència Animal i dels Aliments
Background: In this work, our aim was to generate a map of the copy number variations (CNV) segregating in a population of Murciano-Granadina goats, the most important dairy breed in Spain, and to ascertain the main biological functions of the genes that map to copy number variable regions. [...]
2020 - 10.1186/s12711-020-00564-4
Genetics, selection, evolution, Vol. 52 (August 2020) , art. 44
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