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15 p, 2.2 MB |
The multi-site PeachRefPop collection: a true cultural heritage and international scientific tool for fruit trees
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Cirilli, Marco (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy)) ;
Micali, Sabrina (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Babini, Annarosa (Phytosanitary Service (Italy)) ;
Barreneche, Teresa (Université de Bordeaux. Institut National de la Recherche Agronomique (France)) ;
Bink, Marco (Hendrix Genetics Research, Technology & Services (The Netherlands)) ;
Cantin, Celia M (Centre de Recerca en Agrigenòmica) ;
Ciacciulli, Angelo (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy)) ;
Cos-Terrer, José Enrique (Instituto Murciano de Investigación y Desarrollo Agrario y Alimentario) ;
Drogoudi, Pavlina (Institute of Plant Breeding and Genetic Resources. Hellenic Agricultural Organization "Demeter". Department of Deciduous Fruit Trees (Greece)) ;
Eduardo Muñoz, Iban (Centre de Recerca en Agrigenòmica) ;
Foschi, Stefano (Centro Ricerche Produzioni Vegetali (Italy)) ;
Giovannini, Daniela (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Guerra, Walter (Research Centre Laimburg (Italy)) ;
Liverani, Alessandro (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Pacheco, Igor (Universidad de Chile. Instituto de Nutrición y Tecnología de los Alimentos (Chile)) ;
Pascal, Thierry (Institut National de la Recherche Agronomique. Génétique et Amélioration des Fruits et Légumes (France)) ;
Quilot-Turion, Benedicte (Institut National de la Recherche Agronomique. Génétique et Amélioration des Fruits et Légumes (France)) ;
Verde, Ignazio (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Rossini, Laura (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy)) ;
Bassi, Daniele (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy))
Plants have evolved a range of adaptive mechanisms that adjust their development and physiology to variable external conditions, particularly in perennial species subjected to long-term interplay with the environment. [...]
2020 -  10.1104/pp.19.01412
Plant Physiology, Vol. 184 (October 2020) , p. 632-646
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Fine mapping of the peach pollen sterility gene (Ps/ps) and detection of markers for marker-assisted selection
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Eduardo Muñoz, Iban (Centre de Recerca en Agrigenòmica) ;
Tomás, Carlos de (Centre de Recerca en Agrigenòmica) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Giovannini, D. (Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria. Centro di Ricerca per le Colture di Olive, Frutta e Agrumi (Italia)) ;
Pietrella, M. (Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria. Centro di Ricerca per le Colture di Olive, Frutta e Agrumi (Italia)) ;
Carpenedo, S. (Embrapa Clima Temperado (Brasil)) ;
Bassols Raseira, M. C. (Embrapa Clima Temperado (Brasil)) ;
Batlle, Ignasi (Institut de Recerca i Tecnologia Agroalimentàries. Centre Mas de Bover) ;
Cantín, C. M. (Institut de Recerca i Tecnologia Agroalimentàries. FruitCentre. Parc Científic i Tecnològic Agroalimentari de Lleida) ;
Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
In peach, pollen sterility, expressed as absence of pollen in the anthers, segregates as an undesired trait in breeding programs. Pollen fertility screening in progenies is not a common practice mainly because it does not affect fruit set since cross-pollination is frequent. [...]
2020 - 10.1007/s11032-020-01139-3
Molecular Breeding, Vol. 40, Issue 6 (June 2020) , art. 57
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4.
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11 p, 2.1 MB |
High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing
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Nuñez-Lillo, Gerardo (Universidad Andrés Bello. Centro de Biotecnología Vegetal) ;
Balladares, Cristóbal (Universidad Andrés Bello. Centro de Biotecnología Vegetal) ;
Pavez, Catalina (Universidad Andrés Bello. Centro de Biotecnología Vegetal) ;
Urra, Claudio (Universidad Andrés Bello. Centro de Biotecnología Vegetal) ;
Sanhueza, Dayan (Universidad Andrés Bello. Centro de Biotecnología Vegetal) ;
Vendramin, Elisa (Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria) ;
Dettori, Maria Teresa (Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Verde, Ignazio (Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria) ;
Blanco-Herrera, Francisca (Millennium Institute for Integrative Biology) ;
Campos-Vargas, Reinaldo (Universidad Andrés Bello. Centro de Biotecnología Vegetal) ;
Meneses, Claudio (Universidad Andrés Bello. Center for Genome Regulation)
Peach (Prunus persica) is one of the most important temperate fruit trees in the world, based on its production and cultivated area. Consumer acceptance is the principal objective of multiple breeding programs and it is dependent on many factors. [...]
2019 - 10.1016/j.scienta.2019.108734
Scientia Horticulturae, Vol. 257 (November 2019) , art. 108734
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5.
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16 p, 3.1 MB |
Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch]
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Carrasco-Valenzuela, Tomás (Universidad Andres Bello. Centro de Biotecnología Vegetal) ;
Muñoz-Espinoza, Claudia (Universidad Andres Bello. Centro de Biotecnología Vegetal) ;
Riveros, Aníbal (Universidad Andres Bello. Centro de Biotecnología Vegetal) ;
Pedreschi, Romina (Pontificia Universidad Católica de Valparaíso. Escuela de Agronomía) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Campos-Vargas, Reinaldo (Universidad Andres Bello. Centro de Biotecnología Vegetal) ;
Meneses, Claudio (Universidad Andres Bello. Centro de Biotecnología Vegetal)
Significant differences in softening rate have been reported between melting flesh in peach and nectarine varieties. This trait seems to be controlled by several genes. We aimed to identify candidate genes involved in fruit softening rate by integrating quantitative trait loci (QTL) and expression QTL (eQTL) analyses, comparing siblings with contrasting softening rates. [...]
2019 - 10.3389/fpls.2019.01581
Frontiers in plant science, Vol. 10 (December 2019) , art. 1581
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6.
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29 p, 1.3 MB |
Exploring sources of resistance to brown rot in an interspecific almond × peach population
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Baró Montel, Núria (Institut de Recerca i Tecnologia Agroalimentàries) ;
Eduardo Muñoz, Iban (Centre de Recerca en Agrigenòmica) ;
Usall, Josep (Institut de Recerca i Tecnologia Agroalimentàries) ;
Casals, Carla (Institut de Recerca i Tecnologia Agroalimentàries) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Teixidó, Neus (Institut de Recerca i Tecnologia Agroalimentàries) ;
Torres, Rosario (Institut de Recerca i Tecnologia Agroalimentàries)
Background: Monilinia spp. are responsible for brown rot, one of the most significant stone fruit diseases. Planting resistant cultivars seems a promising alternative, although most commercial cultivars are susceptible to brown rot. [...]
2019 - 10.1002/jsfa.9640
Journal of the Science of Food and Agriculture, Vol. 99, issue 8 (June 2019) , p. 4105-4113
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7.
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15 p, 1.3 MB |
Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies
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Biscarini, Filippo (Parco Tecnologico Padano) ;
Nazzicari, Nelson (Parco Tecnologico Padano) ;
Bink, Marco (Wageningen University and Research. Biometris) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica) ;
Verde, Ignazio (Centro di Ricerca per la Frutticoltura) ;
Micali, Sabrina (Centro di Ricerca per la Frutticoltura) ;
Pascal, Thierry (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ;
Quilot-Turion, Benedicte (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ;
Lambert, Patrick (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Silva Linge, Cassia da (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Pacheco, Igor (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Bassi, Daniele (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Stella, Alessandra (Parco Tecnologico Padano) ;
Rossini, Laura (Parco Tecnologico Padano)
Background: Highly polygenic traits such as fruit weight, sugar content and acidity strongly influence the agroeconomic value of peach varieties. Genomic Selection (GS) can accelerate peach yield and quality gain if predictions show higher levels of accuracy compared to phenotypic selection. [...]
2017 - 10.1186/s12864-017-3781-8
BMC genomics, Vol. 18 (2017) , art. 432
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25 p, 981.4 KB |
Prunus genetics and applications after de novo genome sequencing : achievements and prospects
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Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica) ;
Decroocq, Véronique (Université de Bordeaux. Institut national de la recherche agronomique) ;
Dirlewanger, Elisabeth (Université de Bordeaux. Institut national de la recherche agronomique) ;
Eduardo Muñoz, Iban (Centre de Recerca en Agrigenòmica) ;
Gao, Zhong Shan (Zhejiang University. Allergy Research Center) ;
Gasic, Ksenija (Clemson University) ;
Iezzoni, Amy (Michigan State University. Department of Horticulture) ;
Jung, Sook (Michigan State University. Department of Horticulture) ;
Peace, Cameron (Washington State University. Department of Horticulture) ;
Prieto, Humberto (Instituto de Investigaciones Agropecuarias. Centro Regional de Investigación La Platina (Chile)) ;
Tao, Ryutaro (Kyoto University. Laboratory of Pomology) ;
Verde, Ignazio (Centro di ricerca Olivicoltura. Frutticoltura e Agrumicoltura. Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Abbott, Albert G. (University of Kentucky) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
Prior to the availability of whole-genome sequences, our understanding of the structural and functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping of important traits and development of EST resources. [...]
2019 - 10.1038/s41438-019-0140-8
Horticulture research, Vol. 6 (April 2019) , art. 58
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10 p, 1.6 MB |
The genome of woodland strawberry (Fragaria vesca)
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Shulaev, Vladimir (University of North Texas. Department of Biological Sciences) ;
Sargent, Daniel J. (East Malling Research) ;
Crowhurst, Ross N. (New Zealand Institute for Plant and Food Research Limited) ;
Mockler, Todd C. (Oregon State University. Center for Genome Research and Biocomputing) ;
Folkerts, Otto (Chromatin Inc.) ;
Delcher, Arthur L. (University of Maryland. Center for Bioinformatics and Computational Biology) ;
Jaiswal, Pankaj (Oregon State University. Department of Botany and Plant Pathology) ;
Mockaitis, Keithanne (Indiana University. Center for Genomics and Bioinformatics) ;
Liston, Aaron (Oregon State University. Department of Botany and Plant Pathology) ;
Mane, Shrinivasrao P. (Virginia Bioinformatics Institute) ;
Burns, Paul (Joint Georgia Tech and Emory Wallace H. Coulter. Department of Biomedical Engineering) ;
Davis, Thomas M. (University of New Hampshire. Department of Biological Sciences) ;
Slovin, Janet P. (Henry Wallace Beltsville Agricultural Research Center) ;
Bassil, Nahla (National Clonal Germplasm Repository) ;
Hellens, Roger P. (New Zealand Institute for Plant and Food Research Limited) ;
Evans, Clive (State University. Virginia Bioinformatics Institute) ;
Harkins, Tim (Roche Diagnostics. Roche Applied Science) ;
Kodira, Chinnappa (Roche Diagnostics. Roche Applied Science) ;
Desany, Brian (Roche Diagnostics. Roche Applied Science) ;
Crasta, Oswald R. (Chromatin Inc.) ;
Jensen, Roderick V. (Virginia Tech. Department of Biological Sciences) ;
Allan, Andrew C. (New Zealand Institute for Plant and Food Research Limited) ;
Michael, Todd P. (State University of New Jersey. Waksman Institute of Microbiology) ;
Setubal, Joao Carlos (Virginia Tech. Department of Computer Science) ;
Celton, Jean-Marc (University of the Western Cape. Department of Biotechnology) ;
Rees, D. Jasper G. (University of the Western Cape. Department of Biotechnology) ;
Williams, Kelly P. (State University. Virginia Bioinformatics Institute) ;
Holt, Sarah H. (Institute for Sustainable and Renewable Resources) ;
Rojas, Juan Jairo (State University. Virginia Polytechnic Institute. Department of Horticulture) ;
Chatterjee, Mithu (University of Florida. Graduate Program for Plant Molecular and Cellular Biology) ;
Liu, Bo (University of New Hampshire. Department of Biological Sciences) ;
Silva, Herman (University of Chile. Millennium Nucleus in Plant Cell Biotechnology) ;
Meisel, Lee (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology) ;
Adato, Avital (Weizmann Institute of Science. Department of Plant Sciences) ;
Filichkin, Sergei A. (Oregon State University. Center for Genome Research and Biocomputing) ;
Troggio, Michela (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige () ;
Viola, Roberto (Istituto Agrario San Michele all'Adige (IASMA). Research and Innovation Centre. Foundation Edmund Mach) ;
Ashman, Tia-Lynn (University of Pittsburgh. Department of Biological Sciences) ;
Wang, Hao (University of Georgia. Department of Genetics) ;
Dharmawardhana, Palitha (Oregon State University. Department of Botany and Plant Pathology) ;
Elser, Justin (Oregon State University. Department of Botany and Plant Pathology) ;
Raja, Rajani (Oregon State University. Department of Botany and Plant Pathology) ;
Priest, Henry D. (Oregon State University. Center for Genome Research and Biocomputing) ;
Bryant, Douglas W. (Oregon State University. Center for Genome Research and Biocomputing) ;
Fox, Samuel E. (Oregon State University. Center for Genome Research and Biocomputing) ;
Givan, Scott A. (Oregon State University. Center for Genome Research and Biocomputing) ;
Wilhelm, Larry J. (Oregon State University. Center for Genome Research and Biocomputing) ;
Naithani, Sushma (Oregon State University. Department of Horticulture) ;
Christoffels, Alan (University of the Western Cape. South African National Bioinformatics Institute) ;
Salama, David Y. (University of Florida. Horticultural Sciences Department) ;
Carter, Jade (Indiana University. Center for Genomics and Bioinformatics) ;
Girona, Elena L. (East Malling Research) ;
Zdepski, Anna (State University of New Jersey. Waksman Institute of Microbiology) ;
Wang, Wenqin (State University of New Jersey. Waksman Institute of Microbiology) ;
Kerstetter, Randall A (State University of New Jersey. Waksman Institute of Microbiology) ;
Schwab, Wilfried (Technical University München. Biotechnology of Natural Products) ;
Korban, Schuyler S. (University of Illinois. Department of Natural Resources and Environmental Sciences) ;
Davik, Jahn (Norwegian Institute for Agricultural and Environmental Research. Genetics and Biotechnology) ;
Monfort Vives, Amparo (Centre de Recerca en Agrigenòmica) ;
Denoyes-Rothan, Beatrice (Institut National de la Recherche Agronomique. Unité de Recherche des Espèces Fruitières) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Mittler, Ron (University of North Texas. Department of Biological Sciences) ;
Flinn, Barry (Institute for Sustainable and Renewable Resources. Institute for Advanced Learning and Research) ;
Aharoni, Asaph (Universidad Andres Bello. Millennium Nucleus in Plant Cell Biotechnology. Centro de Biotecnología Vegetal.) ;
Bennetzen, Jeffrey L. (University of Georgia. Department of Genetics) ;
Salzberg, Steven L. (University of Maryland. Center for Bioinformatics and Computational Biology) ;
Dickerman, Allan W (State University. Virginia Bioinformatics Institute. Virginia Polytechnic Institute) ;
Velasco, Riccardo (Foundation Edmund Mach. Istituto Agrario San Michele all'Adige) ;
Borodovsky, Mark (Georgia Tech. School of Computational Science and Engineering) ;
Veilleux, Richard E. (State University. Virginia Polytechnic Institute. Department of Horticulture) ;
Folta, Kevin M. (University of Florida. Graduate Program for Plant Molecular and Cellular Biology)
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria Ã- ananassa) and other economically important rosaceous plants. [...]
2011 - 10.1038/ng.740
Nature genetics, Vol. 43, Issue 2 (February 2011) , p. 109-116
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13 p, 1.3 MB |
Generation of a BAC-based physical map of the melon genome
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González Miguel, Víctor Manuel (Centre de Recerca en Agrigenòmica) ;
Garcia Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Puigdomènech, Pere, 1948- (Centre de Recerca en Agrigenòmica)
Background: Cucumis melo (melon) belongs to the Cucurbitaceae family, whose economic importance among horticulture crops is second only to Solanaceae. Melon has high intra-specific genetic variation, morphologic diversity and a small genome size (450 Mb), which make this species suitable for a great variety of molecular and genetic studies that can lead to the development of tools for breeding varieties of the species. [...]
2010 - 10.1186/1471-2164-11-339
BMC genomics, Vol. 11 (May 2010) , art. 339
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