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1 p, 673.7 KB |
Author Correction : A deletion affecting an LRR-RLK gene co-segregates with the fruit flat shape trait in peach
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López-Girona, Elena (Institut de Recerca i Tecnologia Agroalimentàries) ;
Zhang, Yu (Centre de Recerca en Agrigenòmica) ;
Eduardo, Iban (Institut de Recerca i Tecnologia Agroalimentàries) ;
Hernández Mora, José R. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Alexiou, Konstantinos G. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Arús i Gorina, Pere (Institut de Recerca i Tecnologia Agroalimentàries) ;
Aranzana, Maria José (Institut de Recerca i Tecnologia Agroalimentàries)
2022 -  10.1038/s41598-022-09334-2
Scientific reports (Nature Publishing Group), Vol. 12 (March 2022) , art. 5409
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16 p, 1.3 MB |
The apple REFPOP-a reference population for genomics-assisted breeding in apple
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Jung, Michaela (Breeding Research group (Switzerland)) ;
Roth, Morgane (Breeding Research group (Switzerland)) ;
Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ;
Auwerkerken, Annemarie (Better3fruit N.V.) ;
Bink, Marco (Hendrix Genetics Research, Technology & Services (The Netherlands)) ;
Denancé, Caroline (Université d'Angers) ;
Dujak, Christian (Centre de Recerca en Agrigenòmica) ;
Durel, Charles-Eric (Université d'Angers) ;
Font i Forcada, Carolina (Institut de Recerca i Tecnologia Agroalimentàries) ;
Cantin, Celia M. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Guerra, Walter (Research Centre Laimburg (Italy)) ;
Howard, Nicholas P. (University of Oldenburg) ;
Keller, Beat (Breeding Research group (Switzerland)) ;
Lewandowski, Mariusz (Research Institute of Horticulture (Poland)) ;
Ordidge, Matthew (University of Reading) ;
Rymenants, Marijn (Laboratory for Plant Genetics and Crop Improvement (Belgium)) ;
Sanin, Nadia (Research Centre Laimburg (Italy)) ;
Studer, Bruno (Institute of Agricultural Sciences (Switzerland)) ;
Zurawicz, Edward (Research Institute of Horticulture (Poland)) ;
Laurens, François (Université d'Angers) ;
Patocchi, Andrea (Breeding Research group (Switzerland)) ;
Muranty, Hélène (Université d'Angers)
Breeding of apple is a long-term and costly process due to the time and space requirements for screening selection candidates. Genomics-assisted breeding utilizes genomic and phenotypic information to increase the selection efficiency in breeding programs, and measurements of phenotypes in different environments can facilitate the application of the approach under various climatic conditions. [...]
2020 - 10.1038/s41438-020-00408-8
Horticulture research, Vol. 7 (November 2020) , art. 189
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15 p, 2.2 MB |
The multi-site PeachRefPop collection : a true cultural heritage and international scientific tool for fruit trees
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Cirilli, Marco (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy)) ;
Micali, Sabrina (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Babini, Annarosa (Phytosanitary Service (Italy)) ;
Barreneche, Teresa (Institut National de la Recherche Agronomique (França)) ;
Bink, Marco (Hendrix Genetics Research, Technology & Services (The Netherlands)) ;
Cantin, Celia M. (Centre de Recerca en Agrigenòmica) ;
Ciacciulli, Angelo (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy)) ;
Cos-Terrer, José Enrique (Instituto Murciano de Investigación y Desarrollo Agrario y Alimentario) ;
Drogoudi, Pavlina (Institute of Plant Breeding and Genetic Resources. Hellenic Agricultural Organization "Demeter". Department of Deciduous Fruit Trees (Greece)) ;
Eduardo, Iban (Centre de Recerca en Agrigenòmica) ;
Foschi, Stefano (Centro Ricerche Produzioni Vegetali (Italy)) ;
Giovannini, Daniela (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Guerra, Walter (Research Centre Laimburg (Italy)) ;
Liverani, Alessandro (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Pacheco, Igor (Universidad de Chile. Instituto de Nutrición y Tecnología de los Alimentos (Chile)) ;
Pascal, Thierry (Institut National de la Recherche Agronomique. Génétique et Amélioration des Fruits et Légumes (France)) ;
Quilot-Turion, Bénédicte (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ;
Verde, Ignazio (Research Centre for Olive, Fruit, and Citrus Crops (Italy)) ;
Rossini, Laura (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy)) ;
Bassi, Daniele (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali (Italy))
Plants have evolved a range of adaptive mechanisms that adjust their development and physiology to variable external conditions, particularly in perennial species subjected to long-term interplay with the environment. [...]
2020 - 10.1104/pp.19.01412
Plant Physiology, Vol. 184 (October 2020) , p. 632-646
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23 p, 964.2 KB |
Fine mapping of the peach pollen sterility gene (Ps/ps) and detection of markers for marker-assisted selection
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Eduardo, Iban (Centre de Recerca en Agrigenòmica) ;
Tomás, Carlos de (Centre de Recerca en Agrigenòmica) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Giovannini, Daniela (Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria. Centro di Ricerca per le Colture di Olive, Frutta e Agrumi (Italia)) ;
Pietrella, M. (Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria. Centro di Ricerca per le Colture di Olive, Frutta e Agrumi (Italia)) ;
Carpenedo, S. (Embrapa Clima Temperado (Brasil)) ;
Bassols Raseira, M. C. (Embrapa Clima Temperado (Brasil)) ;
Batlle, Ignasi (Institut de Recerca i Tecnologia Agroalimentàries) ;
Cantin, Celia M (Institut de Recerca i Tecnologia Agroalimentàries. Parc Científic i Tecnològic Agroalimentari de Lleida) ;
Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
In peach, pollen sterility, expressed as absence of pollen in the anthers, segregates as an undesired trait in breeding programs. Pollen fertility screening in progenies is not a common practice mainly because it does not affect fruit set since cross-pollination is frequent. [...]
2020 - 10.1007/s11032-020-01139-3
Molecular Breeding, Vol. 40, Issue 6 (June 2020) , art. 57
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15 p, 1.3 MB |
Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies
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Biscarini, Filippo (Parco Tecnologico Padano) ;
Nazzicari, Nelson (Parco Tecnologico Padano) ;
Bink, Marco (Wageningen University and Research. Biometris) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ;
Verde, Ignazio (Centro di Ricerca per la Frutticoltura) ;
Micali, Sabrina (Centro di Ricerca per la Frutticoltura) ;
Pascal, Thierry (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ;
Quilot-Turion, Bénédicte (Institut national de la recherche agronomique (França). Génétique et Amélioration des Fruits et Légumes) ;
Lambert, Patrick (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Silva Linge, Cassia da (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Pacheco, Igor (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Bassi, Daniele (Università degli Studi di Milano. Dipartimento di Scienze Agrarie e Ambientali) ;
Stella, Alessandra (Parco Tecnologico Padano) ;
Rossini, Laura (Parco Tecnologico Padano)
Background: Highly polygenic traits such as fruit weight, sugar content and acidity strongly influence the agroeconomic value of peach varieties. Genomic Selection (GS) can accelerate peach yield and quality gain if predictions show higher levels of accuracy compared to phenotypic selection. [...]
2017 - 10.1186/s12864-017-3781-8
BMC genomics, Vol. 18 (2017) , art. 432
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25 p, 981.4 KB |
Prunus genetics and applications after de novo genome sequencing : achievements and prospects
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Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ;
Decroocq, Véronique (Institut National de la Recherche Agronomique (França)) ;
Dirlewanger, Elisabeth (Institut National de la Recherche Agronomique (França)) ;
Eduardo, Iban (Centre de Recerca en Agrigenòmica) ;
Gao, Zhong Shan (Zhejiang University. Allergy Research Center) ;
Gasic, Ksenija (Clemson University) ;
Iezzoni, Amy (Michigan State University. Department of Horticulture) ;
Jung, Sook (Michigan State University. Department of Horticulture) ;
Peace, Cameron (Washington State University. Department of Horticulture) ;
Prieto, Humberto (Instituto de Investigaciones Agropecuarias. Centro Regional de Investigación La Platina (Chile)) ;
Tao, Ryutaro (Kyoto University. Laboratory of Pomology) ;
Verde, Ignazio (Centro di ricerca Olivicoltura. Frutticoltura e Agrumicoltura. Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria) ;
Abbott, Albert G. (University of Kentucky) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
Prior to the availability of whole-genome sequences, our understanding of the structural and functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping of important traits and development of EST resources. [...]
2019 - 10.1038/s41438-019-0140-8
Horticulture research, Vol. 6 (April 2019) , art. 58
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11 p, 2.1 MB |
Genetic variation, population structure and linkage disequilibrium in peach commercial varieties
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Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ;
Abbassi, El-Kadri (Centre de Recerca en Agrigenòmica) ;
Howad, Werner (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica)
Background: Peach [Prunus persica (L. ) Batsch] is one of the most economically important fruit crops that, due to its genetic and biological characteristics (small genome size, taxonomic proximity to other important species and short juvenile period), has become a model plant in genomic studies of fruit trees. [...]
2010 - 10.1186/1471-2156-11-69
BMC genetics, Vol. 11 (July 2010) , art. 69
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14 p, 1.3 MB |
An integrated approach for increasing breeding efficiency in apple and peach in Europe
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Laurens, Francois (Institut National de la Recherche Agronomique (França)) ;
Aranzana, Maria José (Centre de Recerca en Agrigenòmica) ;
Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ;
Bassi, Daniele (Università degli Studi di Milano) ;
Bink, Marco (Wageningen University and Research. Biometris) ;
Bonany, Joan (Institut de Recerca i Tecnologia Agroalimentàries) ;
Caprera, Andrea (Parco Tecnologico Padano) ;
Corelli-Grappadelli, Luca (Università di Bologna. Dipartimento di Scienze Agrarie) ;
Costes, Evelyne (Institut National de la Recherche Agronomique (França)) ;
Durel, Charles-Eric (Institut National de la Recherche Agronomique (França)) ;
Mauroux, Jehan-Baptiste (Institut National de la Recherche Agronomique (França)) ;
Muranty, Hélène (Institut National de la Recherche Agronomique (França)) ;
Nazzicari, Nelson (Parco Tecnologico Padano) ;
Pascal, Thierry (Institut National de la Recherche Agronomique (França)) ;
Patocchi, Andrea (Agroscope. Research Division Plant Breeding (Switzerland)) ;
Peil, Andreas (Julius Kühn-Institute Research) ;
Quilot-Turion, Bénédicte (Institut National de la Recherche Agronomique (França)) ;
Rossini, Laura (Parco Tecnologico Padano-) ;
Stella, Alessandra (Parco Tecnologico Padano-) ;
Troggio, Michela (Fondazione Edmund Mach. Research and Innovation Center) ;
Velasco, Riccardo (Fondazione Edmund Mach. Research and Innovation Center) ;
van de Weg, Eric (Wageningen University and Research)
Despite the availability of whole genome sequences of apple and peach, there has been a considerable gap between genomics and breeding. To bridge the gap, the European Union funded the FruitBreedomics project (March 2011 to August 2015) involving 28 research institutes and private companies. [...]
2018 - 10.1038/s41438-018-0016-3
Horticulture research, Vol. 5 (March 2018) , art. 11
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11 p, 2.5 MB |
A deletion affecting an LRR-RLK gene co-segregates with the fruit flat shape trait in peach
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López-Girona, Elena (Institut de Recerca i Tecnologia Agroalimentàries) ;
Zhang, Yu (Centre de Recerca en Agrigenòmica) ;
Eduardo, Iban (Institut de Recerca i Tecnologia Agroalimentàries) ;
Hernández Mora, José R. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Alexiou, Konstantinos G. (Institut de Recerca i Tecnologia Agroalimentàries) ;
Arús i Gorina, Pere (Institut de Recerca i Tecnologia Agroalimentàries) ;
Aranzana, Maria José (Institut de Recerca i Tecnologia Agroalimentàries)
In peach, the flat phenotype is caused by a partially dominant allele in heterozygosis (Ss), fruits from homozygous trees (SS) abort a few weeks after fruit setting. Previous research has identified a SSR marker (UDP98-412) highly associated with the trait, found suitable for marker assisted selection (MAS). [...]
2017 - 10.1038/s41598-017-07022-0
Scientific reports (Nature Publishing Group), Vol. 7, (July 2017) , art. 6714
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