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1.
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34 p, 19.3 MB |
A compendium of genetic regulatory effects across pig tissues
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Teng, Jinyan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Gao, Yahui (University of Maryland. Department of Animal and Avian Sciences) ;
Yin, Hongwei (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Bai, Zhonghao (The University of Edinburgh) ;
Liu, Shuli (Westlake University) ;
Zeng, Haonan (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Bai, Lijing (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Cai, Zexi (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhao, Bingru (China Agricultural University) ;
Li, Xiujin (Zhongkai University of Agriculture and Engineering) ;
Xu, Zhiting (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Lin, Qing (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Zhangyuan (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yang, Wenjing (University of California, Davis. Department of Animal Science) ;
Yu, Xiaoshan (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer) ;
Guan, Dailu (University of California. Department of Animal Science) ;
Hou, Yali (Chinese Academy of Sciences and China National Center for Bioinformation) ;
Keel, Brittney N. (U.S. Meat Animal Research Center) ;
Rohrer, Gary A. (U.S. Meat Animal Research Center) ;
Lindholm-Perry, Amanda K. (U.S. Meat Animal Research Center) ;
Oliver, William T. (U.S. Meat Animal Research Center) ;
Ballester Devis, Maria (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Crespo-Piazuelo, Daniel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Canela-Xandri, Oriol (University of Edinburgh) ;
Rawlik, Konrad (University of Edinburgh. Baillie Gifford Pandemic Science Hub) ;
Xia, Charley (University of Edinburgh. Department of Psychology) ;
Yao, Yuelin (University of Edinburgh) ;
Zhao, Qianyi (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Yao, Wenye (Wageningen University and Research) ;
Yang, Liu (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Li, Houcheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Zhang, Huicong (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Liao, Wang (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Chen, Tianshuo (The University of Edinburgh. Human Genetics Unit at the Institute of Genetics and Cancer) ;
Karlskov-Mortensen, Peter (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Clop, Alex (Consejo Superior de Investigaciones Científicas) ;
Giuffra, Elisabetta (Paris-Saclay University) ;
Wu, Jun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Cai, Xiaodian (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Diao, Shuqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Pan, Xiangchun (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Wei, Chen (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Li, Jinghui (University of California, Davis. Department of Animal Science) ;
Cheng, Hao (University of California, Davis. Department of Animal Science) ;
Wang, Sheng (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Su, Guosheng (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Sahana, Goutam (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Lund, Mogens Sandø (Aarhus University. Center for Quantitative Genetics and Genomics) ;
Dekkers, Jack C. M. (Iowa State University. Department of Animal Science) ;
Kramer, Luke (Iowa State University. Department of Animal Science) ;
Tuggle, Christopher K. (Iowa State University. Department of Animal Science) ;
Corbett, Ryan (Iowa State University. Department of Animal Science) ;
Groenen, Martien A. M. (Wageningen University and Research. Animal Breeding and Genomics) ;
Madsen, Ole (Wageningen University and Research. Animal Breeding and Genomics) ;
Gòdia, Marta (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Rocha, Dominique (Paris-Saclay University) ;
Charles, Mathieu (Paris-Saclay University) ;
Li, Cong-jun (Henry A. Wallace Beltsville Agricultural Research Center) ;
Pausch, Hubert (Animal Genomics) ;
Hu, Xiaoxiang (China Agricultural University. State Key Laboratory of Agrobiotechnology) ;
Frantz, Laurent (Queen Mary University of London. School of Biological and Behavioural Sciences) ;
Luo, Yonglun (Qingdao-Europe Advanced Institute for Life Sciences. Lars Bolund Institute of Regenerative Medicine) ;
Lin, Lin (Aarhus University Hospital. Steno Diabetes Center Aarhus) ;
Zhou, Zhongyin (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Zhang, Zhe (Zhejiang University. Department of Animal Science) ;
Chen, Zitao (Zhejiang University. Department of Animal Science) ;
Cui, Leilei (University College London. UCL Genetics Institute) ;
Xiang, Ruidong (Centre for AgriBiosciences) ;
Shen, Xia (University of Edinburgh. Centre for Global Health Research) ;
Li, Pinghua (Nanjing Agricultural University. Institute of Swine Science) ;
Huang, Ruihua (Nanjing Agricultural University. Institute of Swine Science) ;
Tang, Guoqing (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Li, Mingzhou (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province) ;
Zhao, Yunxiang (Guangxi University. College of Animal Science and Technology) ;
Yi, Guoqiang (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Tang, Zhonglin (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Jiang, Jicai (North Carolina State University. Department of Animal Science) ;
Zhao, Fuping (Chinese Academy of Agricultural Sciences. Institute of Animal Science) ;
Yuan, Xiaolong (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Liu, Xiaohong (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Chen, Yaosheng (Sun Yat-sen University. State Key Laboratory of Biocontrol) ;
Xu, Xuewen (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Shuhong (Huazhong Agricultural University. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction) ;
Zhao, Pengju (Hainan Institute, Zhejiang University) ;
Haley, Chris (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhou, Huaijun (University of California. Department of Animal Science) ;
Wang, Qishan (Zhejiang University. Department of Animal Science) ;
Pan, Yuchun (Zhejiang University. Department of Animal Science) ;
Ding, Xiangdong (China Agricultural University. College of Animal Science and Technology) ;
Ma, Li (University of Maryland. Department of Animal and Avian Sciences) ;
Li, Jiaqi (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Navarro, Pau (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Zhang, Qin (Shandong Agricultural University. College of Animal Science and Technology) ;
Li, Bingjie (Scotland's Rural College. Roslin Institute Building) ;
Tenesa, Albert (The University of Edinburgh. Royal (Dick) School of Veterinary Studies) ;
Li, Kui (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Liu, George E. (U.S. Department of Agriculture) ;
Zhang, Zhe (South China Agricultural University. National Engineering Research Center for Breeding Swine Industry) ;
Fang, Lingzhao (The University of Edinburgh. MRC Human Genetics Unit at the Institute of Genetics and Cancer)
The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been established to develop a public resource of genetic regulatory variants in livestock, which is essential for linking genetic polymorphisms to variation in phenotypes, helping fundamental biological discovery and exploitation in animal breeding and human biomedicine. [...]
2024 -  10.1038/s41588-023-01585-7
Nature genetics, Vol. 56 (january 2024) , p. 112-123
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2.
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12 p, 2.1 MB |
On the holobiont 'predictome' of immunocompetence in pigs
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Calle-García, Joan (Centre de Recerca en Agrigenòmica) ;
Ramayo-Caldas, Yuliaxis (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Zingaretti, Laura M. (Centre de Recerca en Agrigenòmica) ;
Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Ballester Devis, Maria (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
Gut microbial composition plays an important role in numerous traits, including immune response. Integration of host genomic information with microbiome data is a natural step in the prediction of complex traits, although methods to optimize this are still largely unexplored. [...]
2023 - 10.1186/s12711-023-00803-4
Genetics, selection, evolution, Vol. 55 (may 2023)
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4 p, 185.6 KB |
Real-time quantitative PCR-based system for determining transgene copy number in transgenic animals
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Ballester Devis, Maria (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Ibáñez, Elena (Universitat Autònoma de Barcelona. Departament de Biologia Cel·lular, de Fisiologia i d'Immunologia) ;
Sánchez Bonastre, Armando (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Folch, Josep M. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
In this paper, we describe a rapid and accurate real-time quantitative PCR-based system to determine transgene copy number in transgenic animals. We used the 2 method to analyze different transgenic lines without the requirement of a control sample previously determined by Southern blot analysis. [...]
2004 - 10.2144/04374st06
BioTechniques, Vol. 37 Núm. 4 (october 2004) , p. 610-613
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12 p, 1.4 MB |
Genetic architecture of innate and adaptive immune cells in pigs
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Ballester Devis, Maria (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Jové-Juncà, Teodor (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Pascual, Afra (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
López-Serrano, Sergi (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Crespo-Piazuelo, Daniel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Hernández-Banqué, Carles (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
González-Rodríguez, Olga (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Ramayo-Caldas, Yuliaxis (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal) ;
Quintanilla, Raquel (Unitat mixta d'investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal)
Pig industry is facing new challenges that make necessary to reorient breeding programs to produce more robust and resilient pig populations. The aim of the present work was to study the genetic determinism of lymphocyte subpopulations in the peripheral blood of pigs and identify genomic regions and biomarkers associated to them. [...]
2023 - 10.3389/fimmu.2023.1058346
Frontiers in immunology, Vol. 14 (february 2023)
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15 p, 3.6 MB |
Influence of dietary n-3 long-chain fatty acids on microbial diversity and composition of sows' feces, colostrum, milk, and suckling piglets' feces
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Llauradó-Calero, Eudald (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Climent, Eric (ADM Biopolis) ;
Chenoll, Empar (ADM Biopolis) ;
Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Badiola Sáiz, Ignacio (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Lizardo, Rosil (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Torrallardona, David (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Esteve-Garcia, Enric (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Tous, Núria (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal)
Very little is known about the impact of n-3 long-chain fatty acids (n-3 LCFAs) on the microbiota of sows and their piglets. The aim of this study was to evaluate the effect of n-3 LCFA in sow diets on the microbiota composition of sows' feces, colostrum, and milk as well as that of piglets' feces. [...]
2022 - 10.3389/fmicb.2022.982712
Frontiers in microbiology, Vol. 13 (december 2022)
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1 p, 663.0 KB |
Author Correction : Expression-based GWAS identifies variants, gene interactions and key regulators affecting intramuscular fatty acid content and composition in porcine meat
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Puig-Oliveras, Anna (Centre de Recerca en Agrigenòmica) ;
Revilla Sánchez, Manuel (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Fernández, Ana I. (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (Espanya). Departamento de Mejora Genética Animal) ;
Folch, Josep M. (Centre de Recerca en Agrigenòmica) ;
Ballester Devis, Maria (Centre de Recerca en Agrigenòmica)
2022 - 10.1038/s41598-022-08878-7
Scientific reports, Vol. 12 (March 2022) , art. 4902
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10 p, 1.5 MB |
Conserved Synthetic Peptides from the Hemagglutinin of Influenza Viruses Induce Broad Humoral and T-Cell Responses in a Pig Model
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Vergara-Alert, Júlia (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Argilaguet, Jordi 1977- (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Busquets, Núria (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Martín-Valls, Gerard (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Rivas, Raquel (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
López-Soria, Sergio (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Solanes, David (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Majó i Masferrer, Natàlia (Universitat Autònoma de Barcelona. Departament de Sanitat i d'Anatomia Animals) ;
Segalés, Joaquim (Universitat Autònoma de Barcelona. Departament de Sanitat i d'Anatomia Animals) ;
Veljkovic, Veljko (Center for Multidisciplinary Research, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia) ;
Rodriguez, Fernando (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Darji, Ayub (Institut de Recerca i Tecnologia Agroalimentàries)
Outbreaks involving either H5N1 or H1N1 influenza viruses (IV) have recently become an increasing threat to cause potential pandemics. Pigs have an important role in this aspect. As reflected in the 2009 human H1N1 pandemia, they may act as a vehicle for mixing and generating new assortments of viruses potentially pathogenic to animals and humans. [...]
2012 - 10.1371/journal.pone.0040524
PloS one, Vol. 7 (july 2012)
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8.
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12 p, 1.1 MB |
Expression-based GWAS identifies variants, gene interactions and key regulators affecting intramuscular fatty acid content and composition in porcine meat
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Puig-Oliveras, Anna (Centre de Recerca en Agrigenòmica) ;
Revilla Sánchez, Manuel (Centre de Recerca en Agrigenòmica) ;
Castelló Farré, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Fernández, Ana I. (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (Espanya). Departamento de Mejora Genética Animal) ;
Folch, Josep M. (Centre de Recerca en Agrigenòmica) ;
Ballester Devis, Maria (Centre de Recerca en Agrigenòmica)
The aim of this work is to better understand the genetic mechanisms determining two complex traits affecting porcine meat quality: intramuscular fat (IMF) content and its fatty acid (FA) composition. [...]
2016 - 10.1038/srep31803
Scientific reports, Vol. 6 (August 2016) , art. 31803
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17 p, 5.2 MB |
A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits
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Revilla Sánchez, Manuel (Centre de Recerca en Agrigenòmica) ;
Puig-Oliveras, Anna (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Castelló Farré, Anna (Centre de Recerca en Agrigenòmica) ;
Crespo-Piazuelo, Daniel (Centre de Recerca en Agrigenòmica) ;
Paludo, Ediane (Santa Catarina State University. Department of Animal Science) ;
Fernández, Ana I. (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (Espanya). Departamento de Mejora Genética Animal) ;
Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries. Departament de Genètica i Millora Animal) ;
Folch, Josep M. (Centre de Recerca en Agrigenòmica)
Copy number variations (CNVs) are important genetic variants complementary to SNPs, and can be considered as biomarkers for some economically important traits in domestic animals. In the present study, a genomic analysis of porcine CNVs based on next-generation sequencing data was carried out to identify CNVs segregating in an Iberian x Landrace backcross population and study their association with fatty acid composition and growth-related traits. [...]
2017 - 10.1371/journal.pone.017701
PloS one, Vol. 12, Num. 5 (May 2017) , art. e0177014
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12 p, 3.8 MB |
Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions
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Crespo-Piazuelo, Daniel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Estellé, Jordi (Université Paris-Saclay. Institut National de la Recherche Agronomique) ;
Revilla Sánchez, Manuel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Criado Mesas, Lourdes (Centre de Recerca en Agrigenòmica) ;
Ramayo-Caldas, Yuliaxis (Institut de Recerca i Tecnologia Agroalimentàries. Centre de Recerca en Sanitat Animal) ;
Ovilo, Cristina (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (Espanya). Departamento de Mejora Genética Animal) ;
Fernández, Ana I. (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (Espanya). Departamento de Mejora Genética Animal) ;
Ballester Devis, Maria (Institut de Recerca i Tecnologia Agroalimentàries. Departament de Genètica i Millora Animal) ;
Folch, Josep M. (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments)
In addition to its value in meat production, the pig is an interesting animal model for human digestive tract studies due to its physiological similarities. The aim of this study was to describe the microbiome composition, distribution and interaction along the Iberian pig intestinal tract and its role in whole-body energy homeostasis. [...]
2018 - 10.1038/s41598-018-30932-6
Scientific reports, Vol. 8 (august 2018)
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