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20 p, 858.8 KB |
Adaptation and Conservation throughout the Drosophila melanogaster Life-Cycle
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Coronado-Zamora, Marta (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Salvador-Martínez, Irepan (University College London. Department of Genetics, Evolution and Environment) ;
Castellano Esteve, David (Aarhus University. Bioinformatics Research Center) ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Salazar Ciudad, Isaac (Centre de Recerca Matemàtica)
Previous studies of the evolution of genes expressed at different life-cycle stages of Drosophila melanogaster have not been able to disentangle adaptive from nonadaptive substitutions when using nonsynonymous sites. [...]
2019 - 10.1093/gbe/evz086
Genome biology and evolution, Vol. 11, Num. 5 (May 2019) , p. 1463-1482
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3.
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7 p, 406.2 KB |
Genetic polymorphisms of FAS and EVER genes in a Greek population and their susceptibility to cervical cancer : a case control study
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Pavlidou, Evangelia. (Geneva University Hospitals (Suïssa)) ;
Daponte, Alexandros (University of Thessaly. Department of Obstetrics and Gynaecology. Faculty of Medicine) ;
Egea, Raquel (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Dardiotis, Efthimios (University of Thessaly. Department of Neurology) ;
Hadjigeorgiou, Georgios M. (University of Thessaly. Department of Neurology) ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Agorastos, Theodoros (Hippokrateion General Hospital of Thessaloniki)
Background: the aim of the study was to evaluate the association of two SNPs of EVER1/2 genes' region (rs2290907, rs16970849) and the FAS-670 polymorphism with the susceptibility to precancerous lesions and cervical cancer in a Greek population. [...]
2016 - 10.1186/s12885-016-2960-3
BMC Cancer, Vol. 16 (2016) , art. 923
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4.
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16 p, 1.4 MB |
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
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Huang, W. (North Carolina State University. Department of Biological Sciences) ;
Massouras, A. (Ecole Polytechnique Fédérale de Lausanne. Institute of Bioengineering) ;
Inoue, Y. (Osaka University. Center for Education in Liberal Arts and Sciences) ;
Peiffer, J. (North Carolina State University. Department of Biological Sciences) ;
Ràmia Jesús, Miquel (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Tarone, A. M. (Texas AandM University. Department of Entomology) ;
Turlapati, L. (North Carolina State University. Department of Biological Sciences) ;
Zichner, T. (European Molecular Biology Laboratory) ;
Zhu, D. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Lyman, R. F. (North Carolina State University. Department of Biological Sciences) ;
Magwire, M. M. (North Carolina State University. Department of Biological Sciences) ;
Blankenburg, K. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Carbone, M. A. (North Carolina State University. Department of Biological Sciences) ;
Chang, K. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Ellis, L. L. (Texas AandM University. Department of Entomology) ;
Fernandez, S. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Han, Y. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Highnam, G. (Virginia Tech. Virginia Bioinformatics Institute) ;
Hjelmen, C. E. (Texas AandM University. Department of Entomology) ;
Jack, J. R. (North Carolina State University. Department of Biological Sciences) ;
Javaid, M. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Jayaseelan, J. C (Baylor College of Medicine. Human Genome Sequencing Center) ;
Kalra, D. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Lee, S. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Lewis, L. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Munidasa, M. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Ongeri, F. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Patel, Shohba (Baylor College of Medicine. Human Genome Sequencing Center) ;
Perales, L. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Perez, Agapito (Baylor College of Medicine. Human Genome Sequencing Center) ;
Pu, L. L. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Rollmann, S. M. (North Carolina State University. Department of Biological Sciences) ;
Ruth, R. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Saada, N. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Warner, C. (Shell International Exploration and Production, Inc.) ;
Williams, A. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Wu, Y. Q. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Yamamoto, A. (North Carolina State University. Department of Biological Sciences) ;
Zhang, Yiqing (Baylor College of Medicine. Human Genome Sequencing Center) ;
Zhu, Y. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Anholt, R. R. H. (North Carolina State University. Department of Biological Sciences) ;
Korbel, J. O. (European Molecular Biology Laboratory) ;
Mittelman, D. (Virginia Tech. Virginia Bioinformatics Institute. Department of Biological Sciences) ;
Muzny, D. M. (Baylor College of Medicine. Human Genome Sequencing Centere) ;
Gibbs, R. A. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Johnston, J. S. (Texas AandM University. Department of Entomology) ;
Stone, E. A. (North Carolina State University. Department of Biological Sciences) ;
Richards, S. (Baylor College of Medicine. Human Genome Sequencing Center) ;
Deplancke, Bart (Swiss Institute of Bioinformatics) ;
MacKay, T. F. C (North Carolina State University. Department of Biological Sciences)
The Drosophila melanogaster Genetic Reference Panel (DGRP) is a community resource of 205 sequenced inbred lines, derived to improve our understanding of the effects of naturally occurring genetic variation on molecular and organismal phenotypes. [...]
2014 - 10.1101/gr.171546.113
Genome research, Vol. 24, issue 7 (July 2014) , p. 1193-1208
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6 p, 807.2 KB |
The Drosophila melanogaster Genetic Reference Panel
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MacKay, T. F. C. (Department of Genetics. North Carolina State University) ;
Richards, S. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Stone, E. A. (Department of Genetics. North Carolina State University) ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Ayroles, J. F. (Harvard University) ;
Zhu, D. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Casillas Viladerrams, Sònia (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Han, Y. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Magwire, M. M. (Department of Genetics. North Carolina State University) ;
Cridland, J. M. (Department of Ecology and Evolutionary Biology. University of California-Irvine) ;
Richardson, M. F. (Faculty of Life Sciences. University of Manchester) ;
Anholt, R. R. H. (Department of Biology. North Carolina State University) ;
Barrón Aduriz, Maite Garazi (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Bess, C. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Blankenburg, K. P. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Carbone, M. A. (Department of Genetics. North Carolina State University) ;
Castellano Esteve, David (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Chaboub, L. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Duncan, L. (Department of Genetics. North Carolina State University) ;
Harris, Z. (Department of Genetics. North Carolina State University) ;
Javaid, M. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Jayaseelan, J. C. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Jhangiani, S. N. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Jordan, K. W. (Department of Genetics. North Carolina State University) ;
Lara, F. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Lawrence, F. (Department of Genetics. North Carolina State University) ;
Lee, S. L. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Librado, P. (Universitat de Barcelona. Departament de Genètica) ;
Linheiro, R. S. (Faculty of Life Sciences. University of Manchester) ;
Lyman, R. F. (Department of Genetics. North Carolina State University) ;
MacKey, A. J. (Center for Public Health Genomics. University of Virginia) ;
Munidasa, M. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Muzny, D. M. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Nazareth, L. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Newsham, I. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Perales, L. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Pu, L. L. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Qu, C. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Ràmia Jesús, Miquel (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Reid, J. G. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Rollmann, S. M. (Department of Biological Sciences. University of Cincinnati) ;
Rozas, Julio (Universitat de Barcelona. Departament de Genètica) ;
Saada, N. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Turlapati, L. (Department of Genetics. North Carolina State University) ;
Worley, K. C. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Wu, Y. Q. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Yamamoto, A. (Department of Genetics. North Carolina State University) ;
Zhu, Y. (Human Genome Sequencing Center. Baylor College of Medicine) ;
Bergman, C. M. (Faculty of Life Sciences. University of Manchester) ;
Thornton, K. R. (Department of Ecology and Evolutionary Biology. University of California-Irvine) ;
Mittelman, D. (Virginia Bioinformatics Institute. Department of Biological Sciences. Virginia Tech) ;
Gibbs, R. A. (Human Genome Sequencing Center. Baylor College of Medicine)
A major challenge of biology is understanding the relationship between molecular genetic variation and variation in quantitative traits, including fitness. This relationship determines our ability to predict phenotypes from genotypes and to understand how evolutionary forces shape variation within and between species. [...]
2012 - 10.1038/nature10811
Nature, Vol. 482, issue 7384 (Feb. 2012) , p. 173-178
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6 p, 700.6 KB |
IMKT : the integrative McDonald and Kreitman test
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Murga-Moreno, Jesus (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Coronado-Zamora, Marta (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Hervás Fernández, Sergi (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Casillas Viladerrams, Sònia (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
The McDonald and Kreitman test (MKT) is one of the most powerful and widely used methods to detect and quantify recurrent natural selection using DNA sequence data. Here we present iMKT (acronym for integrative McDonald and Kreitman test), a novel web-based service performing four distinct MKT types. [...]
2019 - 10.1093/nar/gkz372
Nucleic acids research, Vol. 47, issue W1 (Jan. 2019) , p. W283-W288
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10 p, 3.7 MB |
PopHumanScan : the online catalog of human genome adaptation
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Murga-Moreno, Jesus (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Coronado-Zamora, Marta (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Bodelon de Frutos, Alejandra (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Casillas Viladerrams, Sònia (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Since the migrations that led humans to colonize Earth, our species has faced frequent adaptive challenges that have left signatures in the landscape of genetic variation and that we can identify in our today-s genomes. [...]
2019 - 10.1093/nar/gky959
Nucleic acids research, Vol. 47, issue D1 (Jan 2019) , p. D1080-D1089
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3 p, 539.7 KB |
Identifiquen més de 800 noves regions del genoma que podrien ser rellevants en l'evolució humana
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Casillas Viladerrams, Sònia (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Murga-Moreno, Jesus (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Coronado-Zamora, Marta (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
Un estudi del grup de recerca Bioinformàtica de la Diversitat Genòmica de la UAB, publicat a la revista Nucleic Acids Research, incrementa en un 40% el total dels senyals de selecció natural en el genoma humà detectades fins ara. [...] Un estudio del grupo de investigación Bioinformática de la Diversidad Genómica de la UAB, publicado en la revista Nucleic Acids Research, incrementa en un 40% el total de las señales de selección natural en el genoma humano detectadas hasta la fecha. [...] A study by the research group Bioinformatics of Genome Diversity at the Universitat Autònoma de Barcelona (UAB), published in the journal Nucleic Acids Research, increases by 40% the total number of signals of natural selection detected in the human genome to date. [...]
2019
UAB divulga, Juny 2019, p. 1-3
3 documents
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3 p, 769.6 KB |
PopHuman : navegador de referència de la variació genètica humana
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Casillas Viladerrams, Sònia (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
La variació genètica humana és el conjunt de diferències genètiques que distingeixen els nostres genomes, ja sigui entre els individus dins d'una població o entre poblacions. El seu estudi té aplicacions evolutives i mèdiques significatives. [...] La variación genética humana es el conjunto de diferencias genéticas que distinguen nuestros genomas, ya sea entre los individuos dentro de una población o entre poblaciones. Su estudio tiene aplicaciones evolutivas y médicas significativas. [...] Human genetic variation is the set of genetic differences that distinguish our genomes, either among individuals within a population or between populations. Its study has significant evolutionary and medical applications. [...]
2018
UAB divulga, Març 2018, p. 1-3
3 documents
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4 p, 1014.6 KB |
Tracen el primer mapa de l'adaptació i la selecció natural de l'anatomia completa d'un embrió
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Barbadilla Prados, Antonio (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Coronado-Zamora, Marta (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia)
El grup de recerca Bioinformàtica de la Diversitat Genòmica de la UAB, en col·laboració amb el grup de Biologia Evolutiva del Desenvolupament de la Universitat d'Hèlsinki, ha aconseguit cartografiar el primer mapa de l'adaptació i la selecció natural de l'anatomia completa de l'embrió de la mosca de la fruita, l'espècie Drosophila melanogaster. [...] El grupo de investigación Bioinformática de la Diversidad Genómica de la UAB, en colaboración con el grupo de Biología Evolutiva del Desarrollo de la Universidad de Helsinki, ha conseguido cartografiar el primer mapa de la adaptación y la selección natural de la anatomía completa del embrión de la mosca de la fruta, la especie Drosophila melanogaster. [...] The research group Bioinformatics of Genomic Diversity of the UAB, in collaboration with the Evolutionary Development Biology group of the University of Helsinki, have mapped by the first time phenotypic adaptation and natural selection over the complete anatomy of the embryo of the fruit fly, the species Drosophila melanogaster. [...]
2018
UAB divulga, Gener 2018, p. 1-4
3 documents
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