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13 p, 1.1 MB |
Arctic-adapted dogs emerged at the Pleistocene-Holocene transition
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Sinding, Mikkel-Holger S. (University of Copenhagen. The GLOBE Institute) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. The GLOBE Institute) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Pitulko, Vladimir (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Feuerborn, Tatiana (University of Copenhagen. The GLOBE Institute) ;
Frantz, Laurent (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
Garrett Vieira, Filipe (University of Copenhagen. The GLOBE Institute) ;
Niemann, Jonas (University of Copenhagen. The GLOBE Institute) ;
Samaniego Castruita, José Alfredo (University of Copenhagen. The GLOBE Institute) ;
Carøe, Christian (University of Copenhagen. The GLOBE Institute) ;
Andersen-Ranberg, Emilie Ulrikka (University of Greenland. The Qimmeq Project) ;
Jordan, Peter (University of Groningen. Arctic Centre and Groningen Institute of Archaeology) ;
Pavlova, Elena (Arctic and Antarctic Research Institute (St. Petersburg, Russia)) ;
Nikolskiy, Pavel (Russian Academy of Sciences. Geological Institute) ;
Kasparov, Aleksei (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Ivanova, Varvara (VNIIOkeangeologia Research Institute) ;
Willerslev, Eske (University of Copenhagen. The GLOBE Institute) ;
Skoglund, Pontus (Harvard Medical School. Department of Genetics) ;
Fredholm, Merete (University of Copenhagen. Department of Veterinary and Animal Sciences) ;
Wennerberg, Sanne Eline (Government of Greenland. Ministry of Fisheries, Hunting and Agriculture) ;
Heide-Jørgensen, Mads Peter (Greenland Institute of Natural Resources) ;
Dietz, Rune (Aarhus University. Department of Bioscience) ;
Sonne, Christian (University of Greenland. The Qimmeq Project) ;
Meldgaard, Morten (University of Copenhagen. The GLOBE Institute) ;
Dalén, Love (Centre for Palaeogenetics) ;
Larson, Greger (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
Petersen, Bent (University of Copenhagen. The GLOBE Institute) ;
Sicheritz-Ponten, Thomas (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Bachmann, Lutz (University of Oslo. Natural History Museum) ;
Wiig, Øystein (University of Oslo. Natural History Museum) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Hansen, Anders Johannes (University of Copenhagen. The GLOBE Institute) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute)
Although sled dogs are one of the most specialized groups of dogs, their origin and evolution has received much less attention than many other dog groups. We applied a genomic approach to investigate their spatiotemporal emergence by sequencing the genomes of 10 modern Greenland sled dogs, an ~9500-year-old Siberian dog associated with archaeological evidence for sled technology, and an ~33,000-year-old Siberian wolf. [...]
2020 -  10.1126/science.aaz8599
Science, Vol. 368, Issue 6498 (June 2020) , p. 1495-1499
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1 p, 5.9 MB |
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
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Liu, Shanlin (China Agricultural University. Department of Entomology, College of Plant Protection) ;
Westbury, Michael V. (University of Copenhagen. The GLOBE Institute) ;
Dussex, Nicolas (Centre for Palaeogenetics) ;
Kieren, J. Mitchell (University of Adelaide. School of Biological Sciences) ;
Sinding, Mikkel-Holger S. (University of Copenhagen. The GLOBE Institute) ;
Heintzman, Peter D. (UiT The Arctic University of Norway. The Arctic University Museum of Norway) ;
Duchêne, David A. (University of Copenhagen. The GLOBE Institute) ;
Kapp, Joshua D. (University of California. Department of Ecology and Evolutionary Biology) ;
Von Seth, Joahanna (Centre for Palaeogenetics) ;
Heiniger, Holly (School of Biological Sciences, University of Adelaide) ;
Sánchez-Barreiro, Fátima (University of Copenhagen. The GLOBE Institute) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
André-Olsen, Remi (Stockholm University. Science for Life Laboratory) ;
De Cahsan, Binia (University of Copenhagen. The GLOBE Institute) ;
Meng, Guanliang (China National Genebank) ;
Yang, Chentao (China National Genebank) ;
Chen, Lei (Center for Ecological and Environmental Sciences) ;
Van der Valk, Tom (Uppsala University. Department of Cell and Molecular Biology) ;
Moodley, Yoshan (University of Venda. Department of Zoology) ;
Rookmaaker, Leendert (Rhino Resource Center) ;
Bruford, Michael W. (Cardiff University. School of Biosciences) ;
Ryder, Oliver A (San Diego Zoo Wildlife Alliance) ;
Steiner, Cynthia (San Diego Zoo Wildlife Alliance) ;
Bruins-van Sonsbeek, Linda G. R. (Rotterdam Zoo) ;
Vartanyan, Sergey (Russian Academy of Sciences) ;
Guo, Chunxue (China National Genebank) ;
Cooper, Alan (South Australian Museum) ;
Kosintsev, Pavel (Russian Academy of Sciences) ;
Kirillova, Irina (Russian Academy of Sciences) ;
Lister, Adrian M. (Natural History Museum) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Dunn, Robert R. (University of Copenhagen. The GLOBE Institute) ;
Lorenzen, Eline D. (University of Copenhagen. The GLOBE Institute) ;
Shapiro, Beth (University of California. Department of Ecology and Evolutionary Biology) ;
Zhang, Guojie (China National Genebank) ;
Antoine, Pierre-Olivier (Université Montpellier. Institut des Sciences de l'Évolution) ;
Dalén, Love (Centre for Palaeogenetics) ;
P. Gilbert, M. Thomas (University of Copenhagen. The GLOBE Institute)
Only five species of the once-diverse Rhinocerotidae remain, making the reconstruction of their evolutionary history a challenge to biologists since Darwin. We sequenced genomes from five rhinoceros species (three extinct and two living), which we compared to existing data from the remaining three living species and a range of outgroups. [...]
2021 - 10.1016/j.cell.2021.07.032
Cell, Vol. 184 (September 2021) , p. 1-12
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3.
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14 p, 1.8 MB |
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
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Barnett, Ross (University of Copenhagen. Section for Evolutionary Genomics) ;
Westbury, Michael V. (University of Copenhagen. Section for Evolutionary Genomics) ;
Sandoval-Velasco, Marcela (University of Copenhagen. Section for Evolutionary Genomics) ;
Garrett Vieira, Filipe (University of Copenhagen. Section for Evolutionary Genomics) ;
Jeon, Sungwon (Ulsan National Institute of Science and Technology. Department of Biomedical Engineering) ;
Zazula, Grant (Government of Yukon. Yukon Palaeontology Program) ;
Martin, Michael (Norwegian University of Science and Technology. Department of Natural History) ;
Ho, Simon Y. W. (University of Sydney. School of Life and Environmental Sciences) ;
Mather, Niklas (University of Sydney. School of Life and Environmental Sciences) ;
Gopalakrishnan, Shyam (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Ramos-Madrigal, Jazmín (University of Copenhagen. Center for Evolutionary Hologenomics) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham. Institute of Microbiology and Infection) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Baez, Aldo Carmon (University of Copenhagen. Section for Evolutionary Genomics) ;
De Cahsan, Binia (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Larson, Greger (University of Oxford. The Palaeogenomics and Bio-Archaeology Research Network) ;
O'Brien, Stephen J. (Nova Southeastern University. Guy Harvey Oceanographic Center) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute. Center for Species Survival) ;
Wilting, Andreas (Leibniz Institute for Zoo and Wildlife Research) ;
Fickel, Jöms (University of Potsdam. Institute for Biochemistry and Biology) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Lorenzen, Eline D. (University of Copenhagen. Center for Evolutionary Hologenomics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Hansen, Anders J. (University of Copenhagen. Section for GeoGenetics) ;
Zhang, Guojie (Chinese Academy of Sciences. Kunming Institute of Zoology) ;
Bhak, Jong (Personal Genomics Institute. Genome Research Foundation) ;
Yamaguchi, Nobuyuki (Universiti Malaysia Terengganu. Institute of Tropical Biodiversity and Sustainable Development) ;
Gilbert, M. Thomas P. (University of Copenhagen. Center for Evolutionary Hologenomics)
Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. [...]
2020 - 10.1016/j.cub.2020.09.051
Current Biology, Vol. 30, Issue 24 (December 2020) , p. ages 5018-5025.e5
2 documentos
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15 p, 726.6 KB |
Inference of natural selection from ancient DNA
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Dehasque, Marianne (Stockholm University) ;
Ávila-Arcos, Maria C. (UNAM Juriquilla) ;
Díez, David (Stockholm University) ;
Fumagalli, Matteo (Imperial College London) ;
Guschanski, Katerina (Uppsala University) ;
Lorenzen, Eline (University of Copenhagen) ;
Malaspinas, Anna-Sapfo (University of Lausanne. SIB Swiss Institute of Bioinformatics) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Martin, Michael (Norwegian University of Science and Technology) ;
Murray, Gemma G. R. (University of Cambridge) ;
Papadopulos, Alexander S. T. (Bangor University) ;
Therkildsen, Nina Overgaard (Cornell University) ;
Wegmann, Daniel (Swiss Institute of Bioinformatics) ;
Dalén, Love (Swedish Museum of Natural History) ;
Foote, Andrew D. (Bangor University)
Evolutionary processes, including selection, can be indirectly inferred based on patterns of genomic variation among contemporary populations or species. However, this often requires unrealistic assumptions of ancestral demography and selective regimes. [...]
2020 - 10.1002/evl3.165
Evolution Letters, Vol. 4, Issue 2 (April 2020) , p. 94-108
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13 p, 1.8 MB |
Historical genomes reveal the genomic consequences of recent population decline in eastern gorillas
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van der Valk, Tom (Uppsala University. Department of Ecology and Genetics (Sweden)) ;
Díez-del-Molino, David (Swedish Museum of Natural History. Department of Bioinformatics and Genetics (Sweden)) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Guschanski, Katerina (Uppsala University. Department of Ecology and Genetics (Sweden)) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics (Sweden))
Many endangered species have experienced severe population declines within the last centuries [1, 2]. However, despite concerns about negative fitness effects resulting from increased genetic drift and inbreeding, there is a lack of empirical data on genomic changes in conjunction with such declines [3, 4, 5, 6, 7]. [...]
2019 - 10.1016/j.cub.2018.11.055
Current biology, Vol. 29, Issue 1 (January 2019) , p. 165-170
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19 p, 6.6 MB |
Evolutionary history, genomic adaptation to toxic diet, and extinction of the Carolina Parakeet
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Gelabert, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Sandoval Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Serres, Aitor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Renom, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
Stiller, Josefin (University of Copenhagen. Department of Biology) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Fang, Qi (BGI-Shenzhen (China)) ;
Feng, Shaohong (BGI-Shenzhen (China)) ;
Mañosa, Santi (Universitat de Barcelona. Institut de Recerca de la Biodiversitat (IRBio)) ;
Pacheco, George (University of Copenhagen. The GLOBE Institute) ;
Ferrando-Bernal, Manuel (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Shi, Guolin (Northwestern Polytechnical University. Center of Special Environmental Biomechanics & Biomedical Engineering) ;
Hao, Fei (Northwestern Polytechnical University. Center of Special Environmental Biomechanics & Biomedical Engineering) ;
Chen, Xianqing (Northwestern Polytechnical University. Center for Ecological and Environmental Sciences) ;
Petersen, Bent (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Olsen, Remi-André (Stockholm University. Department of Biochemistry and Biophysics) ;
Navarro, Arcadi, 1969- (Institució Catalana de Recerca i Estudis Avançats) ;
Deng, Yuan (BGI-Shenzhen (China)) ;
Dalén, Love (Swedish Museum of Natural History. Department of Bioinformatics and Genetics) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Zhang, Guojie (Chinese Academy of Sciences. Center for Excellence in Animal Evolution and Genetics) ;
Antunes, Agostinho (University of Porto. Department of Biology) ;
Gilbert, M. Thomas P. (NTNU University Museum (Norway)) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
As the only endemic neotropical parrot to have recently lived in the northern hemisphere, the Carolina parakeet (Conuropsis carolinensis) was an iconic North American bird. The last surviving specimen died in the Cincinnati Zoo in 1918 [1]. [...]
2020 - 10.1016/j.cub.2019.10.066
Current biology, Vol. 30, Issue 1 (January 2020) , p. 108-114
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