Results overview: Found 4 records in 0.03 seconds.
Articles, 4 records found
Articles 4 records found  
1.
13 p, 1.4 MB The site frequency/dosage spectrum of autopolyploid populations / Ferretti, Luca (The Pirbright Institute) ; Ribeca, Paolo (The Pirbright Institute) ; Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica)
The Site Frequency Spectrum (SFS) and the heterozygosity of allelic variants are among the most important summary statistics for population genetic analysis of diploid organisms. We discuss the generalization of these statistics to populations of autopolyploid organisms in terms of the joint Site Frequency/Dosage Spectrum and its expected value for autopolyploid populations that follow the standard neutral model. [...]
2018 - 10.3389/fgene.2018.00480
Frontiers in genetics, Vol. 9 (Oct. 2018) , art. 480  
2.
25 p, 1.2 MB A generalized Watterson estimator for next-generation sequencing : from trios to autopolyploids / Ferretti, Luca (Université Pierre et Marie CURIE) ; Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica)
Several variations of the Watterson estimator of variability for Next Generation Sequencing (NGS) data have been proposed in the literature. We present a unified framework for generalized Watterson estimators based on Maximum Composite Likelihood, which encompasses most of the existing estimators. [...]
2015 - 10.1016/j.tpb.2015.01.001
Theoretical population biology, Vol. 100 (March 2015) , p. 79-87  
3.
14 p, 1.6 MB Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs / Esteve Codina, Anna (Centre de Recerca en Agrigenòmica) ; Paudel, Yogesh (Wageningen University. Animal Breeding and Genomics Centre) ; Ferretti, Luca (Centre de Recerca en Agrigenòmica) ; Raineri, Emanuele (Centre Nacional d'Anàlisi Genòmica) ; Megens, Hendrik-Jan (Wageningen University. Animal Breeding and Genomics Centre) ; Silió, Luis (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Departamento de Mejora Genética Animal) ; Rodríguez, María C (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Departamento de Mejora Genética Animal) ; Groenen, Martein AM (Wageningen University. Animal Breeding and Genomics Centre) ; Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica) ; Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
In contrast to international pig breeds, the Iberian breed has not been admixed with Asian germplasm. This makes it an important model to study both domestication and relevance of Asian genes in the pig. [...]
2013 - 10.1186/1471-2164-14-148
BMC Genomics, Vol. 14 (March 2013) , art. 148  
4.
15 p, 893.5 KB The effect of single recombination events on coalescent tree height and shape / Ferretti, Luca (Universität zu Köln. Institut für Genetik) ; Disanto, Filippo (Universität zu Köln. Institut für Genetik) ; Wiehe, Thomas (Centre de Recerca en Agrigenòmica)
The coalescent with recombination is a fundamental model to describe the genealogical history of DNA sequence samples from recombining organisms. Considering recombination as a process which acts along genomes and which creates sequence segments with shared ancestry, we study the influence of single recombination events upon tree characteristics of the coalescent. [...]
2013 - 10.1371/journal.pone.0060123
Plos One, Vol. 8, issue 4 (April 2013) , e60123  

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5 Ferretti, Luca
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