Results overview: Found 7 records in 0.02 seconds.
Articles, 7 records found
Articles 7 records found  
1.
14 p, 1.8 MB Evolutionary and functional impact of common polymorphic inversions in the human genome / Giner Delgado, Carla (Universitat Autònoma de Barcelona. Departament de Genètica i Microbiologia) ; Villatoro, Sergi (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Lerga Jaso, Jon (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Gayà Vidal, Magdalena (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Oliva Pavía, Meritxell (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Castellano Esteve, David (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Pantano, Lorena (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Bitarello, Bárbara D. (Max-Planck-Institut für Evolutionäre Anthropologie) ; Izquierdo, David (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Noguera, Isaac (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Olalde, Iñigo (Institut de Biologia Evolutiva (UPF CSIC)) ; Delprat, Alejandra (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Blancher, Antoine (Centre de Physiopathologie Toulouse-Purpan) ; Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF CSIC)) ; Esko, Tõnu (Estonian Genome Center) ; O'Reilly, Paul F. (King's College London. Institute of Psychiatry, Psychology and Neuroscience) ; Andrés, Aida M. (Max-Planck-Institut für Evolutionäre Anthropologie) ; Ferretti, Luca (University of Oxford. Big Data Institute) ; Puig Font, Marta (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Cáceres Aguilar, Mario (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Inversions are one type of structural variants linked to phenotypic differences and adaptation in multiple organisms. However, there is still very little information about polymorphic inversions in the human genome due to the difficulty of their detection. [...]
2019 - 10.1038/s41467-019-12173-x
Nature communications, Vol. 10 (2019) , art. 4222  
2.
15 p, 1.3 MB PRDM9 diversity at fine geographical scale reveals contrasting evolutionary patterns and functional constraints in natural populations of house mice / Vara, Covadonga (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Capilla Pérez, Laia (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Ferretti, Luca (University of Oxford. Big Data Institute) ; Ledda, Alice (Imperial College London. Department for Infectious Disease Epidemiology) ; Sánchez Guillén, Rosa Ana (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Gabriel, Sofia I. (Universidade de Lisboa. Centro de Estudos do Ambiente e do Mar) ; Albert Lizandra, Guillermo (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Florit Sabater, Beatriu (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Bello Rodríguez, Judith (Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ; Ventura Queija, Jacinto (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ; Searle, Jeremy B. (Cornell University. Department of Ecology and Evolutionary Biology) ; Mathias, Maria L. (Universidade de Lisboa. Centro de Estudos do Ambiente e do Mar) ; Ruiz-Herrera Moreno, Aurora (Universitat Autònoma de Barcelona. Departament de Biologia Cellular, Fisiologia i Immunologia)
One of the major challenges in evolutionary biology is the identification of the genetic basis of postzygotic reproductive isolation. Given its pivotal role in this process, here we explore the drivers that may account for the evolutionary dynamics of the PRDM9 gene between continental and island systems of chromosomal variation in house mice. [...]
2019 - 10.1093/molbev/msz091
Molecular biology and evolution, Vol. 36 Núm. 8 (january 2019) , p. 1686-1700  
3.
8 p, 426.0 KB SNP calling by sequencing pooled samples / Pérez-Enciso, Miguel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ; Esteve Codina, Anna (Centre de Recerca en Agrigenòmica) ; Ferretti, Luca (Centre de Recerca en Agrigenòmica) ; Raineri, Emanuele (Centre Nacional d'Anàlisi Genòmica) ; Nevado, Bruno (University of Oxford. Department of Plant Sciences) ; Heath, Simon (Centre Nacional d'Anàlisi Genòmica)
Performing high throughput sequencing on samples pooled from different individuals is a strategy to characterize genetic variability at a small fraction of the cost required for individual sequencing. [...]
2012 - 10.1186/1471-2105-13-239
BMC bioinformatics, Vol. 13 (2012)  
4.
13 p, 1.4 MB The site frequency/dosage spectrum of autopolyploid populations / Ferretti, Luca (The Pirbright Institute) ; Ribeca, Paolo (The Pirbright Institute) ; Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica)
The Site Frequency Spectrum (SFS) and the heterozygosity of allelic variants are among the most important summary statistics for population genetic analysis of diploid organisms. We discuss the generalization of these statistics to populations of autopolyploid organisms in terms of the joint Site Frequency/Dosage Spectrum and its expected value for autopolyploid populations that follow the standard neutral model. [...]
2018 - 10.3389/fgene.2018.00480
Frontiers in genetics, Vol. 9 (Oct. 2018) , art. 480  
5.
25 p, 1.2 MB A generalized Watterson estimator for next-generation sequencing : from trios to autopolyploids / Ferretti, Luca (Université Pierre et Marie CURIE) ; Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica)
Several variations of the Watterson estimator of variability for Next Generation Sequencing (NGS) data have been proposed in the literature. We present a unified framework for generalized Watterson estimators based on Maximum Composite Likelihood, which encompasses most of the existing estimators. [...]
2015 - 10.1016/j.tpb.2015.01.001
Theoretical population biology, Vol. 100 (March 2015) , p. 79-87  
6.
14 p, 1.6 MB Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs / Esteve Codina, Anna (Centre de Recerca en Agrigenòmica) ; Paudel, Yogesh (Wageningen University. Animal Breeding and Genomics Centre) ; Ferretti, Luca (Centre de Recerca en Agrigenòmica) ; Raineri, Emanuele (Centre Nacional d'Anàlisi Genòmica) ; Megens, Hendrik-Jan (Wageningen University. Animal Breeding and Genomics Centre) ; Silió, Luis (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Departamento de Mejora Genética Animal) ; Rodríguez, María C (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Departamento de Mejora Genética Animal) ; Groenen, Martein AM (Wageningen University. Animal Breeding and Genomics Centre) ; Ramos-Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica) ; Pérez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
In contrast to international pig breeds, the Iberian breed has not been admixed with Asian germplasm. This makes it an important model to study both domestication and relevance of Asian genes in the pig. [...]
2013 - 10.1186/1471-2164-14-148
BMC genomics, Vol. 14 (March 2013) , art. 148  
7.
15 p, 893.5 KB The effect of single recombination events on coalescent tree height and shape / Ferretti, Luca (Universität zu Köln. Institut für Genetik) ; Disanto, Filippo (Universität zu Köln. Institut für Genetik) ; Wiehe, Thomas (Centre de Recerca en Agrigenòmica)
The coalescent with recombination is a fundamental model to describe the genealogical history of DNA sequence samples from recombining organisms. Considering recombination as a process which acts along genomes and which creates sequence segments with shared ancestry, we study the influence of single recombination events upon tree characteristics of the coalescent. [...]
2013 - 10.1371/journal.pone.0060123
PloS one, Vol. 8, issue 4 (April 2013) , e60123  

See also: similar author names
1 Ferretti, L.
9 Ferretti, Luca
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