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1.
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18 p, 7.7 MB |
Genetic dissection of climacteric fruit ripening in a melon population segregating for ripening behavior
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Phillips, Michael A (University of Toronto. Department of Biology) ;
Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen) ;
Pujol, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Melon is as an alternative model to understand fruit ripening due to the coexistence of climacteric and non-climacteric varieties within the same species, allowing the study of the processes that regulate this complex trait with genetic approaches. [...]
2020 -  10.1038/s41438-020-00411-z
Horticulture research, Vol. 7 (November 2020) , art. 187
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2.
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17 p, 1.7 MB |
A cryptic variation in a member of the Ovate Family Proteins is underlying the melon fruit shape QTL fsqs8.1
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Martínez Martínez, Cecilia (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Gonzalo, Maria José (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Sipowicz, Pablo (Instituto Nacional de Tecnología Agropecuaria - INTA (Argentina)) ;
Campos, Manuel (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Martínez Fernández, Irene (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Leida, Carmen (Universitat Politècnica de València. Instituto de Conservación y Mejora de la Agrodiversidad Valenciana (COMAV)) ;
Zouine, Mohammed (Centre National de la Recherche Scientifique. Université de Toulouse. Laboratoire de Recherche en Sciences Végétales) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Gómez, María Dolores (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Tornero, Pablo (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Pérez Amador, Miguel Ángel (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Esteras, Cristina ;
Picó, Belén (Universitat Politècnica de València. Instituto de Conservación y Mejora de la Agrodiversidad Valenciana (COMAV)) ;
Romero, Carlos (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC)) ;
Monforte, Antonio J. (Universitat Politècnica de València. Instituto de Biología Molecular y Celular de Plantas (CSIC))
Key message: The gene underlying the melon fruit shape QTL fsqs8. 1 is a member of the Ovate Family Proteins. Variation in fruit morphology is caused by changes in gene expression likely due to a cryptic structural variation in this locus. [...]
2021 - 10.1007/s00122-021-03998-6
Theoretical and Applied Genetics, (November 2021)
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3.
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13 p, 4.7 MB |
A novel introgression line collection to unravel the genetics of climacteric ripening and fruit quality in melon
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Santo Domingo, Miguel (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Valverde, Laura (Centre de Recerca en Agrigenòmica) ;
Martín-Hernández, Ana Montserrat (Centre de Recerca en Agrigenòmica) ;
Pujol, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Introgression lines are valuable germplasm for scientists and breeders, since they ease genetic studies such as QTL interactions and positional cloning as well as the introduction of favorable alleles into elite varieties. [...]
2021 - 10.1038/s41598-021-90783-6
Scientific reports (Nature Publishing Group), Vol. 11 (May 2021) , art 11364
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4.
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Genetic dissection of aroma biosynthesis in melon and its relationship with climacteric ripening
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Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Eltahiri, Abdelali (Centre de Recerca en Agrigenòmica) ;
Bar, Einat (Newe Ya'ar Research Center) ;
Lewinsohn, Efraim (Newe Ya'ar Research Center) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Pujol, Marta (Centre de Recerca en Agrigenòmica)
Aroma is an essential trait in melon fruit quality, but its complexity and genetic basis are still poorly understood. The aim of this study was the identification of quantitative trait loci (QTLs) underlying volatile organic compounds (VOCs) biosynthesis in melon rind and flesh, using a Recombinant Inbred Line (RIL) population from the cross 'Piel de Sapo' (PS) × 'Védrantais' (VED), two commercial varieties segregating for ripening behavior. [...]
2021 - 10.1016/j.foodchem.2021.129484
Food chemistry, Vol. 353 (August 2021) , art. 129484
3 documents
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5.
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6.
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10 p, 1.1 MB |
An Improved Melon Reference Genome With Single-Molecule Sequencing Uncovers a Recent Burst of Transposable Elements With Potential Impact on Genes
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Castanera, Raúl (Centre de Recerca en Agrigenòmica) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Pujol, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Casacuberta i Suñer, Josep M. 1962- (Centre de Recerca en Agrigenòmica)
The published melon (Cucumis melo L. ) reference genome assembly (v3. 6. 1) has still 41. 6 Mb (Megabases) of sequences unassigned to pseudo-chromosomes and about 57 Mb of gaps. Although different approaches have been undertaken to improve the melon genome assembly in recent years, the high percentage of repeats (~40%) and limitations due to read length have made it difficult to resolve gaps and scaffold's misassignments to pseudomolecules, especially in the heterochromatic regions. [...]
2020 - 10.3389/fpls.2019.01815
Frontiers in plant science, Vol. 10 (January 2020) , art. 1815
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7.
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10 p, 1.6 MB |
Mapping Cucumber Vein Yellowing Virus Resistance in Cucumber (Cucumis sativus L.) by Using BSA-seq Analysis
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Pujol, Marta (Centre de Recerca en Agrigenòmica) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Fontaine, Anne-Sophie (Semillas Fitó S.A.) ;
Mayor, Patricia (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ;
Miras, Manuel (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal) ;
Jahrmann, Torben (Semillas Fitó S.A.) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Aranda, Miguel A. (Centro de Edafología y Biología Aplicada del Segura. Departamento de Biología del Estrés y Patología Vegetal)
Cucumber vein yellowing virus (CVYV) causes severe yield losses in cucurbit crops across Mediterranean countries. The control of this virus is based on cultural practices to prevent the presence of its vector (Bemisia tabaci) and breeding for natural resistance, which requires the identification of the loci involved and the development of molecular markers for linkage analysis. [...]
2019 - 10.3389/fpls.2019.01583
Frontiers in plant science, Vol. 10 (December 2019) , art. 1583
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8.
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35 p, 12.9 MB |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits
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Zhao, Guangwei (Zhengzhou Fruit Research Institute) ;
Lian, Qun (Agricultural Genomics Institute at Shenzhen) ;
Zhang, Zhonghua (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Fu, Qiushi (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
He, Yuhua (Zhengzhou Fruit Research Institute) ;
Ma, Shuangwu (Zhengzhou Fruit Research Institute) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Monforte, Antonio J. (Instituto de Biologia Molecular y Celular de Plantas (València, Espanya)) ;
Wang, Pingyong (Zhengzhou Fruit Research Institute) ;
Julca, Irene (Centre de Recerca en Agrigenòmica) ;
Wang, Huaisong (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Liu, Junpu (Zhengzhou Fruit Research Institute) ;
Xu, Yong (Beijing Key Laboratory of Vegetable Germplasm Improvement) ;
Wang, Runze (Nanjing Agricultural University) ;
Ji, Jiabing (Agricultural Genomics Institute at Shenzhen) ;
Xu, Zhihong (Zhengzhou Fruit Research Institute) ;
Kong, Weihu (Zhengzhou Fruit Research Institute) ;
Zhong, Yang (Agricultural Genomics Institute at Shenzhen) ;
Shang, Jianli (Zhengzhou Fruit Research Institute) ;
Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Argyris, Jason (Centre de Recerca en Agrigenòmica) ;
Zhang, Jian (Zhengzhou Fruit Research Institute) ;
Mayobre, Carlos (Centre de Recerca en Agrigenòmica) ;
Pujol, Marta (Centre de Recerca en Agrigenòmica) ;
Oren, Elad (NeweYa'ar Research Center) ;
Ou, Diandian (Zhengzhou Fruit Research Institute) ;
Wang, Jiming (Zhengzhou Fruit Research Institute) ;
Sun, Dexi (Zhengzhou Fruit Research Institute) ;
Zhao, Shengjie (Zhengzhou Fruit Research Institute) ;
Zhu, Yingchun (Zhengzhou Fruit Research Institute) ;
Li, Na (Zhengzhou Fruit Research Institute) ;
Katzir, Nurit (NeweYa'ar Research Center) ;
Gur, Amit (NeweYa'ar Research Center) ;
Dogimont, Catherine (Institut National de la Recherche Agronomique (França)) ;
Schaefer, Hanno (Technical University of Munich. Department of Ecology and Ecosystem Management) ;
Fan, Wei (Agricultural Genomics Institute at Shenzhen) ;
Bendahmane, Abdelhafid (Institut National de la Recherche Agronomique (França)) ;
Fei, Zhangjun (Cornell University. Boyce Thompson Institute for Plant Research) ;
Pitrat, Michel (Institut National de la Recherche Agronomique (França)) ;
Gabaldón, Toni (Centre de Regulació Genòmica) ;
Lin, Tao (Agricultural Genomics Institute at Shenzhen) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Xu, Yongyang (Zhengzhou Fruit Research Institute) ;
Huang, Sanwen (Agricultural Genomics Institute at Shenzhen)
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. [...]
2019 - 10.1038/s41588-019-0522-8
Nature genetics, Vol. 51, issue 11 (Nov. 2019) , p. 1607-1615
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9.
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9 p, 4.9 MB |
Cucurbit Genomics Database (CuGenDB) : A central portal for comparative and functional genomics of cucurbit crops
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Zheng, Yi (Cornell University. Boyce Thompson Institute) ;
Wu, Shan (Cornell University. Boyce Thompson Institute) ;
Bai, Yang (Cornell University. Boyce Thompson Institute) ;
Sun, Honghe (Beijing Academy of Agriculture and Forestry Sciences. National Engineering Research Center for Vegetables) ;
Jiao, Chen (Cornell University. Boyce Thompson Institute) ;
Guo, Shaogui (Beijing Academy of Agriculture and Forestry Sciences. National Engineering Research Center for Vegetables) ;
Zhao, Kun (Cornell University. Boyce Thompson Institute) ;
Blanca, José (Universitat Politècnica de València. Institut Universitari de Conservació i Millora de l'Agrodiversitat Valenciana) ;
Zhang, Zhonghua (Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers) ;
Huang, Sanwen (Chinese Academy of Agricultural Sciences. Agricultural Genomics Institute at Shenzhen) ;
Xu, Yong (Beijing Academy of Agriculture and Forestry Sciences. National Engineering Research Center for Vegetables) ;
Weng, Yiqun (University of Wisconsin. Department of Horticulture) ;
Mazourek, Michael (Cornell University. Plant Breeding and Genetics Section) ;
Reddy, Umesh K. (West Virginia State University. Department of Biology) ;
Ando, Kaori (U.S. Crop Improvement and Protection Research Unit. Department of Agriculture-Agricultural Research Service) ;
McCreight, James D. (Crop Improvement and Protection Research Unit. Department of Agriculture-Agricultural Research Service) ;
Schaffer, Arthur A. (Volcani Center. Plant Science Institute) ;
Burger, Joseph (Newe Yaar Research Center. Plant Science Institute) ;
Tadmor, Yaakov (Newe Yaar Research Center. Plant Science Institute) ;
Katzir, Nurit (Newe Yaar Research Center. Plant Science Institute) ;
Tang, Xuemei (Cornell University. Boyce Thompson Institute) ;
Liu, Yang (Cornell University. Horticulture Section) ;
Giovannoni, James J. (U.S. Robert W. Holley Center for Agriculture and Health. Department of Agriculture-Agricultural Research Service) ;
Ling, Kai-Shu (U.S. Vegetable Laboratory. Department of Agriculture-Agricultural Research Service) ;
Wechter, William P (U.S. Vegetable Laboratory. Department of Agriculture-Agricultural Research Service) ;
Levi, Amnon (U.S. Vegetable Laboratory. Department of Agriculture-Agricultural Research Service) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica) ;
Grumet, Rebecca (Michigan State University. Department of Horticulture) ;
Fei, Zhangjun (U.S. Robert W. Holley Center for Agriculture and Health. Department of Agriculture-Agricultural Research Service)
The Cucurbitaceae family (cucurbit) includes several economically important crops, such as melon, cucumber, watermelon, pumpkin, squash and gourds. During the past several years, genomic and genetic data have been rapidly accumulated for cucurbits. [...]
2019 - 10.1093/nar/gky944
Nucleic acids research, Vol. 47, Issue D1 (January 2019) , p. D1128-D1136
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10.
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17 p, 3.0 MB |
QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map
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Pereira, Lara (Centre de Recerca en Agrigenòmica) ;
Ruggieri, Valentino (Centre de Recerca en Agrigenòmica) ;
Pérez, S. (Centre de Recerca en Agrigenòmica) ;
Alexiou, Konstantinos G. (Centre de Recerca en Agrigenòmica) ;
Fernández, Marta (Semillas Fitó, S.L) ;
Jahrmann, Torben (Semillas Fitó, S.L.) ;
Pujol, Marta (Centre de Recerca en Agrigenòmica) ;
Garcia-Mas, Jordi (Centre de Recerca en Agrigenòmica)
Background: Melon shows a broad diversity in fruit morphology and quality, which is still underexploited in breeding programs. The knowledge of the genetic basis of fruit quality traits is important for identifying new alleles that may be introduced in elite material by highly efficient molecular breeding tools. [...]
2018 - 10.1186/s12870-018-1537-5
BMC plant biology, Vol. 18 (2018) , art. 324
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