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26 p, 12.8 MB |
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci
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Lv, Feng-Hua (China Agricultural University. College of Animal Science and Technology) ;
Cao, Yin-Hong (University of Chinese Academy of Sciences . College of Life Sciences) ;
Liu, Guang-Jian (Novogene Bioinformatics Institute) ;
Luo, Ling-Yun (China Agricultural University. College of Animal Science and Technology) ;
Lu, Ran (China Agricultural University. College of Animal Science and Technology) ;
Liu, Ming-Jun (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Li, Wen-Rong (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Zhou, Ping (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wang, Xin-Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Shen, Min (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Gao, Lei (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Jing-Quan (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Yong-Lin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Liu, Chang-Bin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wan, Peng-Cheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Zhang, Yun-Sheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Pi, Wen-Hui (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Ren, Yan-Ling (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Shen, Zhi-Qiang (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Wang, Feng (Nanjing Agricultural University. Institute of Sheep and Goat Science) ;
Wang, Yu-Tao (Kashi University. College of Life and Geographic Sciences) ;
Li, Jin-Quan (Inner Mongolia Agricultural University. College of Animal Science) ;
Salehian-Dehkordi, Hosein (University of Chinese Academy of Sciences. College of Life Sciences) ;
Hehua, Eer (Ningxia Academy of Agriculture and Forestry Sciences. Grass-Feeding Livestock Engineering Technology Research Center) ;
Liu, Yong-Gang (Yunnan Agricultural University. College of Animal Science and Technology) ;
Chen, Jian-Fei (China Agricultural University. College of Animal Science and Technology) ;
Wang, Jian-Kui (China Agricultural University. College of Animal Science and Technology) ;
Deng, Xue-Mei (China Agricultural University. College of Animal Science and Technology) ;
Esmailizadeh, Ali (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Dehghani-Qanatqestani, Mostafa (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Charati, Hadi (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Nosrati, Maryam (Payame Noor University. Department of Agriculture) ;
Štěpánek, Ondřej (State Veterinary Institute Jihlava. Department of Virology) ;
Rushdi, Hossam E (Cairo University. Department of Animal Production) ;
Olsaker, Ingrid (Norwegian University of Life Sciences. Department of Preclinical Sciences and Pathology) ;
Curik, Ino (University of Zagreb. Department of Animal Science) ;
Gorkhali, Neena A (Nepal Agriculture Research Council. Animal Breeding Division, National Animal Science Institute) ;
Paiva, Samuel R (Embrapa Recursos Genéticos e Biotecnologia) ;
Caetano, Alexandre R (Embrapa Recursos Genéticos e Biotecnologia) ;
Ciani, Elena (Università degli Studi di Bari. Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Weimann, Christina (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Erhardt, Georg (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Amane, Agraw (International Livestock Research Institute) ;
Mwacharo, Joram M (The Roslin Institute Building) ;
Han, Jian-Lin (International Livestock Research Institute (Nairobi, Kènia)) ;
Hanotte, Olivier (University of Nottingham. School of Life Sciences) ;
Periasamy, Kathiravan (International Atomic Energy Agency. Animal Production and Health Laboratory) ;
Johansson, Anna M (Swedish University of Agricultural Sciences. Department of Animal Breeding and Genetics) ;
Hallsson, Jón H (Agricultural University of Iceland. Faculty of Natural Resources and Environmental Sciences) ;
Kantanen, Juha (Natural Resources Institute Finland. Production Systems) ;
Coltman, David W (University of Alberta. Department of Biological Sciences) ;
Bruford, Michael W (Cardiff University. Sustainable Places Research Institute) ;
Lenstra, Johannes A (Utrecht University. Faculty of Veterinary Medicine) ;
Li, Meng-Hua (China Agricultural University. College of Animal Science and Technology)
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the backbone of molecular breeding, but their genome landscapes remain understudied. Here, we present a comprehensive genome resource for wild ovine species, landraces and improved breeds of domestic sheep, comprising high-coverage (∼16. [...]
2021 -  10.1093/molbev/msab353
Molecular biology and evolution, Vol. 39 (december 2021)
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49 p, 4.3 MB |
Tracking five millennia of horse management with extensive ancient genome time series
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Fages, Antoine (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Hanghøj, Kristian (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Khan, Naveed (Abdul Wali Khan University. Department of Biotechnology) ;
Gaunitz, Charleen (Københavns Universitet. Sektion for Geogenetik) ;
Seguin-Orlando, Andaine (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Leonardi, Michela (Københavns Universitet. Sektion for Geogenetik) ;
McCrory Constantz, Christian (Københavns Universitet. Sektion for Geogenetik) ;
Gamba, Cristina (Københavns Universitet. Sektion for Geogenetik) ;
Al-Rasheid, Khaled A. S. (King Saud University. Zoology Department) ;
Albizuri, Silvia (Universitat de Barcelona. Seminari d'Estudis i Recerques Prehistòriques) ;
Alfarhan, Ahmed H. (King Saud University. Zoology Department) ;
Allentoft, Morten (Københavns Universitet. Sektion for Geogenetik) ;
Alquraishi, Saleh (King Saud University. Zoology Department) ;
Anthony, David (Hartwick College. Anthropology Department) ;
Baimukhanov, Nurbol (Shejire DNA project) ;
Barrett, James H. (University of Cambridge. Department of Archaeology) ;
Bayarsaikhan, Jamsranjav (National Museum of Mongolia) ;
Benecke, Norbert (Deutsches Archäologisches Institut) ;
Bernáldez-Sánchez, Eloísa (Instituto Andaluz del Patrimonio Historico. Laboratorio de Paleontologia y Paleobiologia) ;
Berrocal-Rangel, Luis (Universidad Autónoma de Madrid. Departamento de Prehistoria y Arqueología) ;
Biglari, Fereidoun (National Museum of Iran. Department of Paleolithic) ;
Boessenkool, Sanne (Universitetet i Oslo. Senter for økologisk og evolusjonær syntese) ;
Boldgiv, Bazartseren (National University of Mongolia. Ecology Group) ;
Brem, Gottfried (Vetmeduni Vienna. Institut für Tierzucht und Genetik) ;
Brown, Dorcas (Hartwick College. Anthropology Department) ;
Burger, Joachim (Johannes Gutenberg-Universität Mainz. Palaeogenetics Group) ;
Crubézy, Eric (Université de Toulouse. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Daugnora, Linas (Klaipėda university. Osteological material research laboratory) ;
Davoudi, Hossein (National Museum of Iran. Department of Osteology) ;
Damgaard, Peter de Barros (Københavns Universitet. Sektion for Geogenetik) ;
Chorro y de Villa-Ceballos, María de los Ángeles de (Centro de Biología Molecular Severo Ochoa) ;
Deschler-Erb, Sabine (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Detry, Cleia (UNIARQ) ;
Dill, Nadine (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Oom, Maria do Mar (Universidade de Lisboa. Centre for Ecology, Evolution and Environmental Changes) ;
Dohr, Anna (Institut für Ur- und Frühgeschichte und Archäologie der römischen Provinzen) ;
Ellingvåg, Sturla (Explico Foundation) ;
Erdenebaatar, Diimaajav (Ulaanbaatar State University. Department of Archaeology) ;
Fathi, Homa (National Museum of Iran. Department of Osteology) ;
Felkel, Sabine (Vetmeduni Vienna. Institut für Tierzucht und Genetik) ;
Fernández-Rodríguez, Carlos (Universidad de León. Departamento de Historia) ;
García-Viñas, Esteban (Universidad Pablo de Olavide. Departamento de Sistemas Físicos, Químicos y Naturales) ;
Germonpré, Mietje (Muséum des sciences naturelles de Belgique) ;
Granado, José D. (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Hallsson, Jón H. (The Agricultural University of Iceland. Faculty of Agricultural and Environmental Sciences) ;
Hemmer, Helmut (Johannes Gutenberg-Universität Mainz. Institut für Organismische und Molekulare Evolutionsbiologie) ;
Hofreiter, Michael (Universität Potsdam. Instituts für Biochemie und Biologie) ;
Kasparov, Aleksei (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Khasanov, Mutalib (Archaeology Institute of Samarkand) ;
Khazaeli, Roya (University of Tehran. Archaezoology section) ;
Kosintsev, Pavel (Urals Branch of the Russian Academy of Sciences. Institute of Plant and Animal Ecology) ;
Kristiansen, Kristian (Göteborgs universitet. Institutionen för historiska studier) ;
Kubatbek, Tabaldiev (Kyrgyz-Turkish Manas University. Department of History) ;
Kuderna, Lukas (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Kuznetsov, Pavel (Samara State University of Social Science and Education) ;
Laleh, Haeedeh (University of Tehran. Department of Archaeology) ;
Leonard, Jennifer A. (Estación Biológica de Doñana) ;
Lhuillier, Johanna (Maison de l'Orient et de la Méditerranée. Laboratoire Archéorient) ;
Liesau von Lettow-Vorbeck, Corina (Universidad Autónoma de Madrid. Departamento de Prehistoria y Arqueología) ;
Logvin, Andrey (Kostanay State University. Laboratory for Archaeological Research) ;
Lõugas, Lembi (Tallinn University. Archaeological Research Collection) ;
Ludwig, Arne (Leibniz-Institut für Zoo- und Wildtierforschung) ;
Luis, Cristina (Universidade de Lisboa. Centro Interuniversitário de História das Ciências e da Tecnologia) ;
Arruda, Ana Margarida (Uniarq) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Matoso Silva, Raquel. (Instituto Universitário de Lisboa) ;
Merz, Victor (S.Toraighyrov Pavlodar State University) ;
Mijiddorj, Enkhbayar (Ulaanbaatar State University. Department of Archaeology) ;
Miller, Bryan K. (University of Oxford. Faculty of History) ;
Monchalov, Oleg (Samara State University of Social Science and Education) ;
Mohaseb, Fatemeh A. (National Museum of Iran. Department of Osteology) ;
Morales, Arturo (Universidad Autónoma de Madrid. Laboratorio de Arqueozoología) ;
Nieto-Espinet, Ariadna (Universitat de Lleida. Departament d'Història. Grup d'Investigació Prehistòrica) ;
Nistelberger, Heidi (Universitetet i Oslo. Institutt for biovitenskap) ;
Onar, Vedat Onar (İstanbul Üniversitesi - Cerrahpaşa. Faculty of Veterinary Medicine. Department of Anatomy) ;
Pálsdóttir, Albína H. (The Agricultural University of Icelan. Faculty of Agricultural and Environmental Sciences) ;
Pitulko, Vladimir (Russian Academy of Sciences. Institute for the History of Material Culture) ;
Pitskhelauri, Konstantin (Ivane Javakhishvili Tbilisi State University) ;
Pruvost, Mélanie (Université de Bordeaux) ;
Rajic Sikanjic, Petra (Institute for Anthropological Research (Zagreb, Croàcia)) ;
Rapan Papeša, Anita (Vinkovci Municipal Museum (Croàcia)) ;
Roslyakova, Natalia u Samara State University of Social Science and Education ;
Sardari, Alireza (Iranian Center for Archaeological Research) ;
Sauer, Eberhard (The University of Edinburgh. School of History, Classics and Archaeology) ;
Schafberg, Renate (Martin-Luther-Universität Halle-Wittenberg. Central Natural Science Collections) ;
Scheu, Amelie (Johannes Gutenberg-Universität Mainz. Institut für Organismische und Molekulare Evolutionsbiologie) ;
Schibler, Jörg (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Schlumbaum, Angela (Integrative prähistorische und naturwissenschaftliche Archäologie) ;
Serrand, Nathalie (Muséum National d'Histoire Naturelle (Paris, França)) ;
Serres-Armero, Aitor (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Shapiro, Beth (University of California. Department of Ecology and Evolutionary Biology) ;
Sheikhi Seno, Shiva (National Museum of Iran. Department of Osteology) ;
Shevnina, Irina (Kostanay State University. Laboratory for Archaeological Research) ;
Shidrang, Sonia (University of Kashan. aeedi Institute for Advanced Studies) ;
Southon, John (University of California. Department Earth System Science) ;
Star, Bastiaan (Universitetet i Oslo. Senter for økologisk og evolusjonær syntese) ;
Sykes, Naomi (University of Nottingham. Department of Archaeology) ;
Taheri, Kamal (Kermanshah Regional Water Authority (Iran)) ;
Taylor, William (Max-Planck-Institut für Menschheitsgeschichte) ;
Teegen, Wolf-Rüdiger (Institut für Ur- und Frühgeschichte und Archäologie der römischen Provinzen) ;
Trbojević Vukičević, Tajana (University of Zagreb. Faculty of Veterinary Medicine. Department of Anatomy, Histology and Embryology) ;
Trixl, Simon (Institut für Ur- und Frühgeschichte und Archäologie der römischen Provinzen) ;
Tumen, Dashzeveg (National University of Mongolia. Department of Anthropology and Archaeology) ;
Undrakhbold, Sainbileg (National University of Mongolia. Ecology Group) ;
Usmanova, Emma (Buketov Karaganda State University. Saryarka Archaeological Institute) ;
Vahdati, Ali (Iranian Center for Archaeological Research) ;
Valenzuela-Lamas, Silvia (Institució Milà i Fontanals) ;
Viegas, Catarina (Universidade de Lisboa. Faculdade de Letras. Centro de Arqueologia) ;
Wallner, Barbara (Vetmeduni Vienna. Institut für Tierzucht und Genetik) ;
Weinstock, Jaco (University of Southampton. Faculty of Humanities) ;
Zaibert, Victor (Al Farabi Kazakh National University. Scientific Research Institute of Archaeology and Steppe Civilizations) ;
Clavel, Benoit (Muséum National d'Histoire Naturelle, Archéozoologie, Archéobotanique, Sociétés, Pratiques et Environnements (Paris, França)) ;
Lepetz, Sébastien (Muséum National d'Histoire Naturelle, Archéozoologie, Archéobotanique, Sociétés, Pratiques et Environnements (Paris, França)) ;
Mashkour, Marjan (National Museum of Iran. Department of Osteology) ;
Helgason, Agnar (deCODE Genetics (Reykjavík, Islàndia)) ;
Stefánsson, Kári (deCODE Genetics (Reykjavík, Islàndia)) ;
Barrey, Eric (AgroParisTech) ;
Willerslev, Eske (Københavns Universitet. Sektion for Geogenetik) ;
Outram, Alan K. (University of Exeter. Department of Archaeology) ;
Librado, Pablo (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse) ;
Orlando, Ludovic (Université Paul Sabatier. Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse)
Horse domestication revolutionized warfare and accelerated travel, trade, and the geographic expansion of languages. Here, we present the largest DNA time series for a non-human organism to date, including genome-scale data from 149 ancient animals and 129 ancient genomes (≥1-fold coverage), 87 of which are new. [...]
2019 - 10.1016/j.cell.2019.03.049
Cell, Vol. 177, issue 6 (May 2019) , p. 1419-1435.e31
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