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14 p, 2.8 MB |
Critical assessment of protein intrinsic disorder prediction
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Necci, Marco (University of Padua. Department of Biomedical Sciences) ;
Piovesan, Damiano (University of Padua. Department of Biomedical Sciences) ;
Hoque, M. T. (University of New Orleans. Computer Science) ;
Walsh, Ian (Agency for Science, Technology and Research. Bioprocessing Technology Institute) ;
Iqbal, Sumaiya (Broad Institute of MIT and Harvard. Center for Psychiatric Research) ;
Vendruscolo, Michele (University of Cambridge. Centre for Misfolding Diseases. Department of Chemistry) ;
Sormanni, Pietro (University of Cambridge. Centre for Misfolding Diseases. Department of Chemistry) ;
Wang, Chen (Columbia University. Department of Medicine) ;
Raimondi, Daniele (ESAT-STADIUS. KU Leuven) ;
Sharma, Ronesh (Fiji National University) ;
Zhou, Yaoqi (Griffith University. Institute for Glycomics and School of Information and Communication Technology) ;
Litfin, Thomas (Griffith University. Institute for Glycomics and School of Information and Communication Technology) ;
Galzitskaya, Oxxana Valerianovna (Russian Academy of Sciences. Institute of Theoretical and Experimental Biophysics) ;
Lobanov, Michail Yu (Russian Academy of Sciences. Institute of Protein Research) ;
Vranken, Wim (Vrije Universiteit Brussel. Interuniversity Institute of Bioinformatics in Brussels) ;
Wallner, Björn (Linköping University. Department of Physics, Chemistry and Biology) ;
Mirabello, Claudio (Linköping University. Department of Physics, Chemistry and Biology) ;
Malhis, Nawar (University of British Columbia. Michael Smith Laboratories) ;
Dosztányi, Zsuzsanna (Eötvös Loránd University. Department of Biochemistry) ;
Erdős, Gábor (Eötvös Loránd University. Department of Biochemistry) ;
Mészáros, Bálint (European Molecular Biology Laboratory. Structural and Computational Biology Unit) ;
Gao, Jianzhao (Nankai University. School of Mathematical Sciences and LPMC) ;
Wang, Kui (Nankai University. School of Mathematical Sciences and LPMC) ;
Hu, Gang (Nankai University. School of Statistics and Data Science) ;
Wu, Zhonghua (Nankai University. School of Mathematical Sciences and LPMC) ;
Sharma, Alok (University of the South Pacific. School of Engineering and Physics) ;
Hanson, Jack (Griffith University. School of Engineering and Built Environment. Signal Processing Laboratory Griffith University. School of Engineering and Built Environment. Signal Processing Laboratory Signal Processing Laboratory. School of Engineering and Built Environment. Griffith University) ;
Callebaut, Isabelle (Sorbonne Université. Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie. Muséum National d'Histoire Naturelle) ;
Bitard-Feildel, Tristan (Sorbonne Université. Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie. Muséum National d'Histoire Naturelle) ;
Orlando, Gabriele (VIB-KU Leuven. Switch Laboratorium.) ;
Peng, Zhenling (Tianjin University. Center for Applied Mathematics) ;
Xu, Jinbo (Toyota Technological Institute at Chicago) ;
Wang, Sheng (Toyota Technological Institute at Chicago) ;
Jones, David T. (University College London) ;
Cozzetto, Domenico (University College London) ;
Meng, Fanchi (University of Alberta. Department of Electrical and Computer Engineering) ;
Yan, Jing (University of Alberta. Department of Electrical and Computer Engineering) ;
Gsponer, Jörg (University of British Columbia. Michael Smith Laboratories) ;
Cheng, Jianlin (University of Missouri. Department of Electrical Engineering and Computer Science) ;
Wu, Tianqi (University of Missouri. Department of Electrical Engineering and Computer Science) ;
Kurgan, Lukasz (Virginia Commonwealth University. Department of Computer Science) ;
Promponas, Vasilis J. (University of Cyprus. Department of Biological Sciences. Bioinformatics Research Laboratory) ;
Tamana, Stella (University of Cyprus. Department of Biological Sciences. Bioinformatics Research Laboratory) ;
Marino-Buslje, Cristina (Fundación Instituto Leloir (Buenos Aires, Argentina)) ;
Martínez-Pérez, Elisabeth (Fundación Instituto Leloir (Buenos Aires, Argentina)) ;
Chasapi, Anastasia (Centre for Research & Technology Hellas. Chemical Process & Energy Resources Institute) ;
Ouzounis, Christos (Centre for Research & Technology Hellas. Chemical Process & Energy Resources Institute) ;
Dunker, A. Keith (Indiana University School of Medicine. Center for Computational Biology and Bioinformatics) ;
Kajava, Andrey V (University of Montpellier. Centre de Recherche en Biologie cellulaire de Montpellier) ;
Leclercq, Jeremy Y. (University of Montpellier. Centre de Recherche en Biologie cellulaire de Montpellier) ;
Aykac-Fas, Burcu (Danish Cancer Society Research Center) ;
Lambrughi, Matteo (Danish Cancer Society Research Center) ;
Maiani, Emiliano (Danish Cancer Society Research Center) ;
Papaleo, Elena (Danish Cancer Society Research Center) ;
Chemes, Lucía Beatriz (Universidad Nacional de San Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas) ;
Álvarez, Lucía (Universidad Nacional de San Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas) ;
González-Foutel, Nicolás S. (Universidad Nacional de San Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas) ;
Iglesias, Valentin (Universitat Autònoma de Barcelona. Departament de Bioquímica i de Biologia Molecular) ;
Pujols Pujol, Jordi (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Ventura, Salvador (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Palopoli, Nicolas (Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología) ;
Benítez, Guillermo I (Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología) ;
Parisi, Gustavo (Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología) ;
Bassot, Claudio (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Elofsson, Arne (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Govindarajan, Sudha (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Lamb, John (Stockholm University. Department of Biochemistry and Biophysics and Science for Life Laboratory) ;
Salvatore, Marco (Copenhagen University. Department of Biology) ;
Hatos, András (Università di Padova. Dipartimento di Scienze Biomediche) ;
Monzon, Alexander Miguel (Università di Padova. Dipartimento di Scienze Biomediche) ;
Bevilacqua, Martina (Università di Padova. Dipartimento di Scienze Biomediche) ;
Mičetić, Ivan (Università di Padova. Dipartimento di Scienze Biomediche) ;
Minervini, Giovanni (Università di Padova. Dipartimento di Scienze Biomediche) ;
Paladin, Lisanna (Università di Padova. Dipartimento di Scienze Biomediche) ;
Quaglia, Federica (Università di Padova. Dipartimento di Scienze Biomediche) ;
Leonardi, Emanuela (Università di Padova) ;
Davey, Norman E. (The Institute of Cancer Research. Chelsea) ;
Horvath, Tamas (Research Centre for Natural Sciences. Institute of Enzymology) ;
Kovacs, Orsolya Panna (Research Centre for Natural Sciences. Institute of Enzymology) ;
Murvai, Nikoletta (Research Centre for Natural Sciences. Institute of Enzymology) ;
Pancsa, Rita (Research Centre for Natural Sciences. Institute of Enzymology) ;
Schad, Eva (Research Centre for Natural Sciences. Institute of Enzymology) ;
Szabo, Beata (Research Centre for Natural Sciences. Institute of Enzymology) ;
Tantos, Agnes (Research Centre for Natural Sciences. Institute of Enzymology) ;
Macedo-Ribeiro, Sandra (Universidade do Porto. Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde) ;
Manso, Jose Antonio (Universidade do Porto. Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde) ;
Barbosa Pereira, Pedro José (Universidade do Porto. Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde) ;
Davidović, Radoslav (University of Belgrade. Vinča Institute of Nuclear Sciences - National Institute of thе Republic of Serbia.) ;
Veljkovic, Nevena (University of Belgrade. Vinča Institute of Nuclear Sciences - National Institute of thе Republic of Serbia.) ;
Hajdu-Soltész, Borbála (Eötvös Loránd University. Department of Biochemistry) ;
Pajkos, Mátyás (Eötvös Loránd University. Department of Biochemistry) ;
Szaniszló, Tamás (Eötvös Loránd University. Department of Biochemistry) ;
Guharoy, Mainak (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Lazar, Tamas (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Macossay-Castillo, Mauricio (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Tompa, Peter (Vrije Universiteit Brussel. Structural Biology Brussels) ;
Tosatto, Silvio (University of Padua. Department of Biomedical Sciences)
Intrinsically disordered proteins, defying the traditional protein structure-function paradigm, are a challenge to study experimentally. Because a large part of our knowledge rests on computational predictions, it is crucial that their accuracy is high. [...]
2021 -  10.1038/s41592-021-01117-3
Nature Methods, Vol. 18 (May 2021) , p. 472-481
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36 p, 1.0 MB |
Rainfall manipulation experiments as simulated by terrestrial biosphere models : where do we stand?
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Paschalis, Athanasios (Imperial College London) ;
Fatichi, Simone (ETH Zürich. Institute of Environmental Engineering) ;
Zscheischler, Jakob (Universität Bern. Centre for Climate Change Research) ;
Ciais, Philippe (Centre national de la recherche scientifique. Laboratoire des Sciences du Climat et de l'Environnement) ;
Bahn, Michael (University of Innsbruck. Institute of Ecology) ;
Boysen, Lena (University of Innsbruck. Institute of Ecology) ;
Chang, Jinfeng (Laboratoire des Sciences du Climat et de L'Environnement) ;
De Kauwe, Martin (University of New South Wales) ;
Estiarte, Marc (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Goll, Daniel (Laboratoire des Sciences du Climat et de l'Environnement) ;
Hanson, Paul J. (Oak Ridge National Laboratory) ;
Harper, Anna B. (University of Exeter. College of Engineering, Mathematics, and Physical Science) ;
Hou, Enqing (Northern Arizona University) ;
Kigel, Jaime (Universitah ha-Ivrit bi-Yerushalayim) ;
Knapp, Alan K. (Colorado State University. Department of Biology) ;
Larsen, Klaus Steenberg (Københavns Universitet. Institut for Geovidenskab og Naturforvaltning) ;
Li, Wei (Laboratoire des Sciences du Climat et de l'Environnement) ;
Lienert, Sebastian (University of Bern) ;
Luo, Yiqi (Tsinghua University. Department of Earth System Science) ;
Meir, Patrick (Australian National University. Research School of Biology) ;
Nabel, Julia E. M. S. (Max Planck Institute for Meteorology) ;
Ogaya Inurrigarro, Romà (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Parolari, Anthony J. (Marquette University) ;
Peng, Changhui (Université du Québec à Montréal. Department of Biological Sciences) ;
Peñuelas, Josep (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Pongratz, Julia (Ludwig Maximilian University of Munich) ;
Rambal, Serge (Université de Montpellier) ;
Schmidt, Inger K. (University of Copenhagen) ;
Shi, Hao (Auburn University) ;
Sternberg, Marcelo (Tel-Aviv. University. Department of Molecular Biology & Ecology of Plants) ;
Tian, Hanqin (Auburn University) ;
Tschumi, Elisabeth (University of Bern) ;
Ukkola, Anna (University of New South Wales) ;
Vicca, Sara (University of Antwerp. Biology Department. Centre of Excellence PLECO) ;
Viovy, Nicolas (Centre national de la recherche scientifique. Laboratoire des Sciences du Climat et de l'Environnement) ;
Wang, Ying-Ping (CSIRO Oceans and Atmosphere) ;
Wang, Zhuonan (Auburn University) ;
Williams, Karina (Met Office Hadley Centre) ;
Wu, Donghai (Sino-French Institute for Earth System Science) ;
Zhu, Qiuan (Northwest A&F University)
Changes in rainfall amounts and patterns have been observed and are expected to continue in the near future with potentially significant ecological and societal consequences. Modelling vegetation responses to changes in rainfall is thus crucial to project water and carbon cycles in the future. [...]
2020 - 10.1111/gcb.15024
Global change biology, Vol. 26, Issue 6 (June 2020) , p. 3336-3355
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28 p, 1.3 MB |
Few multi-year precipitation-reduction experiments find a shift in the productivity-precipitation relationship
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Estiarte, Marc (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Vicca, Sara (Universiteit Antwerpen. Departement Biologie) ;
Peñuelas, Josep (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Bahn, Michael. (Universität Innsbruck. Institut für Ökologie) ;
Beier, Claus (Københavns Universitet. Institut for Geoscience of Natural Resource Management) ;
Emmett, Bridge A. (Centre for Ecology and Hydrology-Bango) ;
Fay, Philip A. (United States. Agricultural Research Service) ;
Hanson, Paul J (Oak Ridge National Laboratory. Climate Change Science Institute) ;
Hasibeder, Roland (Universität Innsbruck. Institut für Ökologie) ;
Kigel, Jaime (Universitah ha-Ivrit bi-Yerushalayim) ;
Kröel-Dulay, György (MTA Ökológiai Kutatóközpont) ;
Larsen, Klaus Steenberg (Københavns Universitet. Institut for Geoscience of Natural Resource Management) ;
Lellei-Kovács, Eszter (MTA Ökológiai Kutatóközpont) ;
Limousin, Jean-Marc (Centre d'Ecologie Fonctionnelle et Evolutive) ;
Ogaya Inurrigarro, Romà (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Ourcival, Jean-Marc (Centre d'Ecologie Fonctionnelle et Evolutive) ;
Reinsch, Sabine (Norsk institutt for vannforskning. Center for Catchment and Urban Water Research, Section for Water and Society) ;
Sala, Osvaldo E. (Arizona State University. School of Life Sciences and School of Sustainability) ;
Schmidt, Inger Kappel (Københavns Universitet. Institut for Geoscience of Natural Resource Management) ;
Sternberg, Marcelo (Tel-Aviv. University. Department of Molecular Biology & Ecology of Plants) ;
Tielborger, Katja (Universität Tübingen. Department of Biology) ;
Tietema, Albert (Universiteit van Amsterdam. Institute for Biodiversity and Ecosystem Dynamics) ;
Janssens, Ivan (Universiteit Antwerpen. Departement Biologie)
Well-defined productivity-precipitation relationships of ecosystems are needed as benchmarks for the validation of land models used for future projections. The productivity-precipitation relationship may be studied in two ways: the spatial approach relates differences in productivity to those in precipitation among sites along a precipitation gradient (the spatial fit, with a steeper slope); the temporal approach relates interannual productivity changes to variation in precipitation within sites (the temporal fits, with flatter slopes). [...]
2016 - 10.1111/gcb.13269
Global change biology, Vol. 22, No. 7 (July 2016) , p. 2570-2581
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23 p, 844.8 KB |
Can current moisture responses predict soil CO₂ efflux under altered precipitation regimes? A synthesis of manipulation experiments
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Vicca, Sara (Universiteit Antwerpen. Departement Biologie) ;
Bahn, Michael. (Universität Innsbruck. Institut für Ökologie) ;
Estiarte, Marc (Centre de Recerca Ecològica i d'Aplicacions Forestals) ;
Loon, E. E. van (Universiteit van Amsterdam. Institute for Biodiversity and Ecosystem Dynamics) ;
Vargas, R. (University of Delaware. Department of Plant and Soil Sciences) ;
Alberti, G. (Università di Udine) ;
Ambus, P. (Danmarks tekniske universitet. Institut for Kemisk og Biokemisk Teknologi) ;
Arain, M. A. (McMaster Centre for Climate Change) ;
Beier, Claus (Norsk institutt for vannforskning) ;
Bentley, L. P. (Texas Tech University. Department of Biological Sciences) ;
Borken, W. (Universität Bayreuth. Lehrstuhl für Bodenökologie) ;
Buchmann, Nina (Eidgenössischen Technischen Hochschule Zürich. Institut für Umweltsystemwissenschaften) ;
Collins, Scott L. (University of New Mexico. Biology Department) ;
de Dato, Giovanbattista (Università degli studi della Tuscia di Viterbo. Dipartimento per l'Innovazione nei sistemi Biologici, Agro-alimentari e. Forestali) ;
Dukes, Jeffrey S. (Purdue University. Department of Forestry and Natural Resources) ;
Escolar, C. (Universidad Rey Juan Carlos. Área de Biodiversidad y Conservación) ;
Fay, P. (Grassland Soil and Water Research Laboratory (U.S.)) ;
Guidolotti, Gabriele (Università degli studi della Tuscia di Viterbo. Dipartimento per l'Innovazione nei sistemi Biologici, Agro-alimentari e. Forestali) ;
Hanson, Paul J (Oak Ridge National Laboratory) ;
Kahmen, A. (Eidgenössischen Technischen Hochschule Zürich. Institut für Agrarwissenschaften) ;
Kröel-Dulay, György (Hungarian Academy of Sciences. Institute of Ecology and Botany) ;
Ladreiter-Knauss, T. (Universität Innsbruck. Institut für Ökologie) ;
Larsen, Klaus Steenberg (Danmarks tekniske universitet. Institut for Kemisk og Biokemisk Teknologi) ;
Lellei-Kovacs, E. (Hungarian Academy of Sciences. Institute of Ecology and Botany) ;
Lebrija-Trejos, Edwin (Tel Aviv University. Department of Molecular Biology and Ecology of Plants) ;
Maestre, Fernando T (Universidad Rey Juan Carlos. Área de Biodiversidad y Conservación) ;
Marhan, S. (Universität Hohenheim. Institut für Bodenkunde und Standortslehre) ;
Marshall, M. (Centre for Ecology and Hydrology (Great Britain)) ;
Meir, Patrick. (University of Edinburgh. School of GeoSciences) ;
Miao, Y. (Henan da xue) ;
Muhr, J. (Max-Planck. Institut für Biogeochemie) ;
Niklaus, P. A. (Universität Zürich. Institut für Evolutionsbiologie und Umweltwissenschaften) ;
Ogaya Inurrigarro, Romà (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Peñuelas, Josep (Universitat Autònoma de Barcelona. Departament de Biologia Animal, de Biologia Vegetal i d'Ecologia) ;
Poll, Christian (Universität Hohenheim. Institut für Bodenkunde und Standortslehre) ;
Rustad, L. E. (United States. Forest Service. Northeastern Research Station) ;
Savage, K. (Woods Hole Research Center (Woods Hole, Mass.)) ;
Schindlbacher, A. (Bundesforschungs- und Ausbildungszentrum für Wald, Naturgefahren und Landschaft (Austria)) ;
Schmidt, I. K. (Køvenhavns universitet. Department of Geosciences and Natural Resource Management) ;
Smith, A. R. (Centre for Ecology and Hydrology (Great Britain)) ;
Sotta, E. D. (Embrapa Amapá Caixa Postal) ;
Suseela, V. (Purdue University. Department of Forestry and Natural Resources) ;
Tietema, A. (Universiteit van Amsterdam. Institute for Biodiversity and Ecosystem Dynamics) ;
Gestel, N. van (Texas Tech University. Department of Biological Sciences) ;
Straaten, O. van (Büsgen-Institut. Ökopedologie der Tropen und Subtropen) ;
Wan, S. (Henan da xue) ;
Weber, U. (Max-Planck. Institut für Biogeochemie) ;
Janssens, Ivan (Universiteit Antwerpen. Departement Biologie)
As a key component of the carbon cycle, soil CO₂ efflux (SCE) is being increasingly studied to improve our mechanistic understanding of this important carbon flux. Predicting ecosystem responses to climate change often depends on extrapolation of current relationships between ecosystem processes and their climatic drivers to conditions not yet experienced by the ecosystem. [...]
2014 - 10.5194/bg-11-2991-2014
Biogeosciences, Vol. 11 Issue 11 (Juny 2014) , p. 2991-3013
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