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26 p, 12.8 MB |
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci
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Lv, Feng-Hua (China Agricultural University. College of Animal Science and Technology) ;
Cao, Yin-Hong (University of Chinese Academy of Sciences . College of Life Sciences) ;
Liu, Guang-Jian (Novogene Bioinformatics Institute) ;
Luo, Ling-Yun (China Agricultural University. College of Animal Science and Technology) ;
Lu, Ran (China Agricultural University. College of Animal Science and Technology) ;
Liu, Ming-Jun (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Li, Wen-Rong (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center) ;
Zhou, Ping (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wang, Xin-Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Shen, Min (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Gao, Lei (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Jing-Quan (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Hua (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Yang, Yong-Lin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Liu, Chang-Bin (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Wan, Peng-Cheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Zhang, Yun-Sheng (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Pi, Wen-Hui (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Production) ;
Ren, Yan-Ling (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Shen, Zhi-Qiang (Shandong Binzhou Academy of Animal Science and Veterinary Medicine) ;
Wang, Feng (Nanjing Agricultural University. Institute of Sheep and Goat Science) ;
Wang, Yu-Tao (Kashi University. College of Life and Geographic Sciences) ;
Li, Jin-Quan (Inner Mongolia Agricultural University. College of Animal Science) ;
Salehian-Dehkordi, Hosein (University of Chinese Academy of Sciences. College of Life Sciences) ;
Hehua, Eer (Ningxia Academy of Agriculture and Forestry Sciences. Grass-Feeding Livestock Engineering Technology Research Center) ;
Liu, Yong-Gang (Yunnan Agricultural University. College of Animal Science and Technology) ;
Chen, Jian-Fei (China Agricultural University. College of Animal Science and Technology) ;
Wang, Jian-Kui (China Agricultural University. College of Animal Science and Technology) ;
Deng, Xue-Mei (China Agricultural University. College of Animal Science and Technology) ;
Esmailizadeh, Ali (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Dehghani-Qanatqestani, Mostafa (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Charati, Hadi (Shahid Bahonar University of Kerman. Department of Animal Science) ;
Nosrati, Maryam (Payame Noor University. Department of Agriculture) ;
Štěpánek, Ondřej (State Veterinary Institute Jihlava. Department of Virology) ;
Rushdi, Hossam E (Cairo University. Department of Animal Production) ;
Olsaker, Ingrid (Norwegian University of Life Sciences. Department of Preclinical Sciences and Pathology) ;
Curik, Ino (University of Zagreb. Department of Animal Science) ;
Gorkhali, Neena A (Nepal Agriculture Research Council. Animal Breeding Division, National Animal Science Institute) ;
Paiva, Samuel R (Embrapa Recursos Genéticos e Biotecnologia) ;
Caetano, Alexandre R (Embrapa Recursos Genéticos e Biotecnologia) ;
Ciani, Elena (Università degli Studi di Bari. Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica) ;
Amills i Eras, Marcel (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Weimann, Christina (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Erhardt, Georg (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics) ;
Amane, Agraw (International Livestock Research Institute) ;
Mwacharo, Joram M (The Roslin Institute Building) ;
Han, Jian-Lin (International Livestock Research Institute (Nairobi, Kènia)) ;
Hanotte, Olivier (University of Nottingham. School of Life Sciences) ;
Periasamy, Kathiravan (International Atomic Energy Agency. Animal Production and Health Laboratory) ;
Johansson, Anna M (Swedish University of Agricultural Sciences. Department of Animal Breeding and Genetics) ;
Hallsson, Jón H (Agricultural University of Iceland. Faculty of Natural Resources and Environmental Sciences) ;
Kantanen, Juha (Natural Resources Institute Finland. Production Systems) ;
Coltman, David W (University of Alberta. Department of Biological Sciences) ;
Bruford, Michael W (Cardiff University. Sustainable Places Research Institute) ;
Lenstra, Johannes A (Utrecht University. Faculty of Veterinary Medicine) ;
Li, Meng-Hua (China Agricultural University. College of Animal Science and Technology)
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the backbone of molecular breeding, but their genome landscapes remain understudied. Here, we present a comprehensive genome resource for wild ovine species, landraces and improved breeds of domestic sheep, comprising high-coverage (∼16. [...]
2021 -  10.1093/molbev/msab353
Molecular biology and evolution, Vol. 39 (december 2021)
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18 p, 3.8 MB |
Paternal origins and migratory episodes of domestic sheep
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Deng, Juan (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Xie, Xing-Long (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Wang, Dong-Feng (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Zhao, Chao (Hebei University. College of Life Science (China)) ;
Lv, Feng-Hua (China Agricultural University. College of Animal Science and Technology (China)) ;
Li, Xin (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Yang, Ji (China Agricultural University. College of Animal Science and Technology (China)) ;
Yu, Jia-Lin (Station for Breeding and Improvement of Animal and Poultry of Changshou District (China)) ;
Shen, Min (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Breeding (China)) ;
Gao, Lei (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Breeding (China)) ;
Yang, Jing-Quan (Xinjiang Academy of Agricultural and Reclamation Sciences. State Key Laboratory of Sheep Genetic Improvement and Healthy Breeding (China)) ;
Liu, Ming-Jun (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center (China)) ;
Li, Wen-Rong (Xinjiang Academy of Animal Science. Animal Biotechnological Research Center (China)) ;
Wang, Yu-Tao (Kashi University. College of Life and Geographic Sciences (China)) ;
Wang, Feng (Nanjing Agricultural University. Institute of Sheep and Goat Science (China)) ;
Li, Jin-Quan (Inner Mongolia Agricultural University. College of Animal Science (China)) ;
Hehua, Eer (Ningxia Academy of Agriculture and Forestry Sciences. Grass-Feeding Livestock Engineering Technology Research Center (China)) ;
Liu, Yong-Gang (Yunnan Agricultural University. College of Animal Science and Technology (China)) ;
Shen, Zhi-Qiang (Shandong Binzhou Academy of Animal Science and Veterinary Medicine (China)) ;
Ren, Yan-Ling (Shandong Binzhou Academy of Animal Science and Veterinary Medicine (China)) ;
Liu, Guang-Jian (Novogene Bioinformatics Institute (China)) ;
Chen, Ze-Hui (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Gorkhali, Neena A. (Nepal Agriculture Research Council. National Animal Science Institute. Animal Breeding Division (Nepal)) ;
Rushdi, Hossam E. (Cairo University. Department of Animal Production (Egypt)) ;
Salehian-Dehkordi, H. (Chinese Academy of Sciences. Key Laboratory of Animal Ecology and Conservation Biology) ;
Esmailizadeh, Ali (Shahid Bahonar University of Kerman. Department of Animal Science (Iran)) ;
Nosrati, Maryam (Payame Noor University. Department of Agriculture (Iran)) ;
Paiva, Samuel R. (Embrapa Recursos Genéticos e Biotecnologia (Brazil)) ;
Caetano, Alexandre R. (Embrapa Recursos Genéticos e Biotecnologia (Brazil)) ;
Štěpánek, Ondřej (State Veterinary Institute Jihlava. Department of Virology (Czech Republic)) ;
Olsaker, Ingrid (Norwegian University of Life Sciences. Department of Preclinical Sciences and Pathology (Norway)) ;
Weimann, Christina (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics (Germany)) ;
Erhardt, Georg (Justus-Liebig-University Giessen. Department of Animal Breeding and Genetics (Germany)) ;
Curik, Ino (University of Zagreb. Department of Animal Science (Croatia)) ;
Kantanen, Juha (Natural Resources Institute Finland. Production Systems (Finland)) ;
Mwacharo, Joram M. (International Center for Agricultural Research in the Dry Areas (Ethiopia)) ;
Hanotte, Olivier (International Livestock Research Institute. LiveGene (Ethiopia)) ;
Bruford, Michael W. (Cardiff University. Sustainable Places Research Institute (UK)) ;
Ciani, Elena (Università degli Studi di Bari Aldo Moro. Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica (Italy)) ;
Periasamy, Kathiravan (International Atomic Energy Agency. Animal Production and Health Laboratory (Austria)) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Lenstra, Johannes A. (Utrecht University.Faculty of Veterinary Medicine (the Netherlands)) ;
Han, Jian-Lin (International Livestock Research Institute (Nairobi, Kènia)) ;
Zhang, Hong-Ping (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province (China)) ;
Li, Li (Sichuan Agricultural University. Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province (China)) ;
Li, Meng-Hua (China Agricultural University. College of Animal Science and Technology (China))
The domestication and subsequent global dispersal of livestock are crucial events in human history, but the migratory episodes during the history of livestock remain poorly documented [1-3]. Here, we first developed a set of 493 novel ovine SNPs of the male-specific region of Y chromosome (MSY) by genome mapping. [...]
2020 - 10.1016/j.cub.2020.07.077
Current Biology, Vol. 30, Issue 20 (October 2020) , p. 4085-4095
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11 p, 2.4 MB |
Patterns of homozygosity in insular and continental goat breeds
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Cardoso, Tainã Figueiredo (Centre de Recerca en Agrigenòmica) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Bertolini, Francesca (Iowa State University. Department of Animal Science) ;
Rothschild, Max (Iowa State University. Department of Animal Science) ;
Marras, Gabriele (Fondazione Parco Tecnologico Padano. Bioinformatics Core Facility) ;
Boink, Geert (Stichting Zeldzame Huisdierrassen) ;
Jordana i Vidal, Jordi (Universitat Autònoma de Barcelona. Departament de Ciència Animal i dels Aliments) ;
Capote, Juan (Instituto Canario de Investigaciones Agrarias) ;
Carolan, Sean (The Old Irish Goat Society) ;
Hallsson, Jón H. (Agricultural University of Iceland. Faculty of Land and Animal Resources) ;
Kantanen, Juha (Natural Resources Institute Finland. Department of Production Systems) ;
Pons Barro, Agueda L. (Servei de Millora Agrària i Pesquera (SEMILLA). Unitat de Races Autòctones) ;
Lenstra, Johannes A. (Utrecht University. Faculty of Veterinary Medicine)
Genetic isolation of breeds may result in a significant loss of diversity and have consequences on health and performance. In this study, we examined the effect of geographic isolation on caprine genetic diversity patterns by genotyping 480 individuals from 25 European and African breeds with the Goat SNP50 BeadChip and comparing patterns of homozygosity of insular and nearby continental breeds. [...]
2018 - 10.1186/s12711-018-0425-7
Genetics, selection, evolution, Vol. 50 (november 2018)
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