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Articles, 5 records found
Articles 5 records found  
1.
12 p, 1.3 MB The genetic impact of an Ebola outbreak on a wild gorilla population / Fontsere, Claudia (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Frandsen, Peter (University of Copenhagen. Department of Biology. Section for Computational and RNA Biology) ; Hernandez Rodriguez, Jessica (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Niemann, Jonas (University of Copenhagen. Center for Evolutionary Hologenomics. The GLOBE Institute) ; Hjorth Scharff-Olsen, Camilla (University of Copenhagen. Center for Evolutionary Hologenomics. The GLOBE Institute) ; Vallet, Dominique (Centre National de la Recherche Scientifique. University of Rennes. ECOBIO: Ecosystems, Biodiversity, Evolution) ; Le Gouar, Pascaline (Centre National de la Recherche Scientifique. University of Rennes. ECOBIO: Ecosystems, Biodiversity, Evolution) ; Ménard, Nelly (Centre National de la Recherche Scientifique. University of Rennes. ECOBIO: Ecosystems, Biodiversity, Evolution) ; Navarro, Arcadi (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Siegismund, Hans R. (University of Copenhagen. Department of Biology. Section for Computational and RNA Biology) ; Hvilsom, Christina (Copenhagen Zoo. Research and Conservation) ; Gilbert, M. Thomas P. (University of Copenhagen. Center for Evolutionary Hologenomics. The GLOBE Institute) ; Kuhlwilm, Martin (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Hughes, David (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Marques-Bonet, Tomas (Institut Català de Paleontologia Miquel Crusafont)
Background: Numerous Ebola virus outbreaks have occurred in Equatorial Africa over the past decades. Besides human fatalities, gorillas and chimpanzees have also succumbed to the fatal virus. The 2004 outbreak at the Odzala-Kokoua National Park (Republic of Congo) alone caused a severe decline in the resident western lowland gorilla (Gorilla gorilla gorilla) population, with a 95% mortality rate. [...]
2021 - 10.1186/s12864-021-08025-y
BMC genomics, Vol. 22 (October 2021) , art. 735  
2.
17 p, 2.4 MB Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures / García-Pérez, Raquel (Institut de Biologia Evolutiva (Barcelona)) ; Esteller-Cucala, Paula (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Mas, Glòria (Centre de Regulació Genòmica) ; Lobón, Irene (Institut de Biologia Evolutiva (Barcelona)) ; Di Carlo, Valerio (Centre de Regulació Genòmica) ; Riera, Meritxell (Institut de Biologia Evolutiva (Barcelona)) ; Kuhlwilm, Martin (Institut de Biologia Evolutiva (Barcelona)) ; Navarro, Arcadi (Institut de Biologia Evolutiva (Barcelona)) ; Blancher, Antoine (Centre de Physiopathologie Toulouse-Purpan) ; Di Croce, Luciano (Centre de Regulació Genòmica) ; Gomez-Skarmeta, José Luis (Centro Andaluz de Biología del Desarrollo) ; Juan, David (Institut de Biologia Evolutiva (Barcelona)) ; Marques-Bonet, Tomas (Institut Català de Paleontologia Miquel Crusafont)
Changes in the epigenetic regulation of gene expression have a central role in evolution. Here, we extensively profiled a panel of human, chimpanzee, gorilla, orangutan, and macaque lymphoblastoid cell lines (LCLs), using ChIP-seq for five histone marks, ATAC-seq and RNA-seq, further complemented with whole genome sequencing (WGS) and whole genome bisulfite sequencing (WGBS). [...]
2021 - 10.1038/s41467-021-23397-1
Nature communications, Vol. 12 (May 2021) , art. 3116  
3.
14 p, 627.9 KB Genetic variation in pan species is shaped by demographic history and harbors lineage-specific functions / Han, Sojung, 1984- (Institut de Biologia Evolutiva (Barcelona)) ; Andrés, Aida M. (UCL Genetics Institute) ; Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ; Kuhlwilm, Martin (Institut de Biologia Evolutiva (Barcelona)) ; Universitat Autònoma de Barcelona
Chimpanzees (Pan troglodytes) and bonobos (Pan paniscus) are the closest living relatives of humans, but the two species show distinct behavioral and physiological differences, particularly regarding female reproduction. [...]
2019 - 10.1093/gbe/evz047
Genome biology and evolution, Vol. 11, Issue 4 (April 2019) , p. 1178-1191  
4.
18 p, 2.3 MB The genomic footprints of the fall and recovery of the crested ibis / Feng, Sahaohong (University of Chinese Academy of Sciences) ; Fang, Qi (China National GeneBank) ; Barnett, Ross (Københavns Universitet. Sektion for GeoGenetik) ; Li, Cai (China National GeneBank) ; Han, Sojung (Institute of Evolutionary Biology) ; Kuhlwilm, Martin (Institute of Evolutionary Biology) ; Zhou, Long (China National GeneBank) ; Pan, Hailin (China National GeneBank) ; Deng, Yuan (China National GeneBank) ; Chen, Guangji (University of Chinese Academy of Sciences) ; Gamauf, Anita (Naturhistorisches Museum Wien) ; Woog, Friederike (Staatliches Museum für Naturkunde) ; Prys-Jones, Robert (The Natural History Museum) ; Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ; P.Gilbert, M. Thomas (Københavns Universitet. Sektion for GeoGenetik) ; Zhang, Guojie (China National GeneBank)
Human-induced environmental change and habitat fragmentation pose major threats to biodiversity and require active conservation efforts to mitigate their consequences. Genetic rescue through translocation and the introduction of variation into imperiled populations has been argued as a powerful means to preserve, or even increase, the genetic diversity and evolutionary potential of endangered species [1, 2, 3, 4]. [...]
2019 - 10.1016/j.cub.2018.12.008
Current biology, Vol. 29, issue 2 (Jan. 2019) , p. 340-349  
5.
8 p, 1.1 MB Selective single molecule sequencing and assembly of a human Y chromosome of African origin / Kuderna, Lukas (Institut de Biologia Evolutiva (Barcelona)) ; Lizano, Esther (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Julià, Eva (Institut Hospital del Mar d'Investigacions Mèdiques) ; Gómez-Garrido, Jessica (Centre de Regulació Genòmica) ; Serres-Armero, Aitor (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Kuhlwilm, Martin (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Antoni Alandes, Regina (Centre de Regulació Genòmica) ; Alvarez-Estape, Marina (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; David Juan (Universitat Pompeu Fabra. Institut de Biologia Evolutiva) ; Heath, Simon (Centre de Regulació Genòmica) ; Alioto, Tyler (Centre de Regulació Genòmica) ; Gut, Marta (Centre de Regulació Genòmica) ; Gut, Ivo (Centre de Regulació Genòmica) ; Heide Schierup, Mikkel (Aarhus University. Bioinformatics Research Center) ; Fornas, Oscar (Centre de Regulació Genòmica) ; Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont)
Mammalian Y chromosomes are often neglected from genomic analysis. Due to their inherent assembly difficulties, high repeat content, and large ampliconic regions, only a handful of species have their Y chromosome properly characterized. [...]
2019 - 10.1038/s41467-018-07885-5
Nature communications, Vol. 10 (January 2019) , art. 4  

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