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1.
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16 p, 3.6 MB |
The population genomic legacy of the second plague pandemic
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Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Ebenesersdóttir, S. Sunna (University of Iceland. Department of Anthropology) ;
Lundstrøm, Inge K.C. (University of Copenhagen. The GLOBE Institute) ;
Turner-Walker, Gordon (National Yunlin University of Science & Technology (Taiwan)) ;
Moore, Kristjan H.S. (deCODE Genetics (Reykjavík, Islàndia)) ;
Luisi, Pierre (Universidad Nacional de Córdoba (Argentina)) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
Martin, Michael D. (Norwegian University of Science and Technology. NTNU University Museum) ;
Ellegaard, Martin Rene (Norwegian University of Science and Technology. NTNU University Museum) ;
Magnússon, Ólafur þ. (deCODE Genetics (Reykjavík, Islàndia)) ;
Sigurðsson, Ásgeir (deCODE Genetics (Reykjavík, Islàndia)) ;
Snorradóttir, Steinunn (deCODE Genetics (Reykjavík, Islàndia)) ;
Magnúsdóttir, Droplaug N. (deCODE Genetics (Reykjavík, Islàndia)) ;
Laffoon, Jason E. (Leiden University. Department of Archaeological Sciences) ;
van Dorp, Lucy (University College London. Department of Genetics, Evolution and Environment) ;
Liu, Xiaodong (University of Copenhagen. Department of Biology) ;
Moltke, Ida (University of Copenhagen. Department of Biology) ;
Ávila-Arcos, Maria C (Universidad Nacional Autónoma de México. Laboratorio Internacional de Investigación sobre el Genoma Humano) ;
Schraiber, Joshua G. (Illumina Inc. Illumina Artificial Intelligence Laboratory (USA)) ;
Rasmussen, Simon (University of Copenhagen. Novo Nordisk Foundation Center for Protein Research) ;
Juan, David (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gelabert, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Fotakis, Anna K. (University of Copenhagen. The GLOBE Institute) ;
Iraeta-Orbegozo, Miren (University of Copenhagen. The GLOBE Institute) ;
Vågene, Åshild J. (Max Planck Institute for the Science of Human History) ;
Denham, Sean Dexter (University of Stavanger. Museum of Archaeology) ;
Christophersen, Axel (Norwegian University of Science and Technology. NTNU University Museum) ;
Stenøien, Hans K. (Norwegian University of Science and Technology. NTNU University Museum) ;
Garrett Vieira, Filipe (University of Copenhagen. The GLOBE Institute) ;
Liu, Shanlin (China National GeneBank) ;
Günther, Torsten (Evolutionsbiologisk Centrum EBC (Sweden)) ;
Kivisild, Toomas (University of Tartu. Institute of Genomics) ;
Moseng, Ole Georg (University of South-Eastern Norway. Department of Business, History and Social Sciences) ;
Skar, Birgitte (Norwegian University of Science and Technology. NTNU University Museum) ;
Cheung, Christina (Muséum National d'Histoire Naturelle (París, França)) ;
Sandoval-Velasco, Marcela (University of Copenhagen. The GLOBE Institute) ;
Wales, Nathan (University of York. Department of Archaeology) ;
Schroeder, Hannes (University of Copenhagen. The GLOBE Institute) ;
Campos, Paula F. (Universidade do Porto. Centro Interdisciplinar de Investigação Marinha e Ambiental) ;
Guðmundsdóttir, Valdís B. (University of Iceland. Department of Anthropology) ;
Sicheritz-Ponten, Thomas (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Petersen, Bent (AIMST University (Malàisia). Centre of Excellence for Omics-Driven Computational Biodiscovery) ;
Halgunset, Jostein (Biobank1 (Norway)) ;
Gilbert, Edmund (School of Pharmacy and Biomolecular Sciences (Ireland)) ;
Cavalleri, Gianpiero L. (FutureNeuro SFI Research Centre (Ireland)) ;
Hovig, Eivind (University of Oslo. Center for Bioinformatics) ;
Kockum, Ingrid (Karolinska Institutet (Estocolm, Suècia). Department of Clinical Neuroscience) ;
Olsson, Tomas (Karolinska Institutet (Estocolm, Suècia). Department of Clinical Neuroscience) ;
Alfredsson, Lars (Karolinska Institutet (Estocolm, Suècia)) ;
Hansen, Thomas F. (Copenhagen Mental Health Services. Institute of Biological Psychiatry) ;
Werge, Thomas (Copenhagen Mental Health Services. Institute of Biological Psychiatry) ;
Willerslev, Eske (University of Cambridge. Department of Zoology) ;
Balloux, François (University College London. Department of Genetics, Evolution and Environment) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Nielsen, Rasmus (University of California. Department of Integrative Biology) ;
Stefánsson, Kári (deCODE Genetics (Reykjavík, Islàndia)) ;
Helgason, Agnar (deCODE Genetics (Reykjavík, Islàndia)) ;
Gilbert, M. Thomas P. (Norwegian University of Science and Technology. University Museum)
Human populations have been shaped by catastrophes that may have left long-lasting signatures in their genomes. One notable example is the second plague pandemic that entered Europe in ca. 1,347 CE and repeatedly returned for over 300 years, with typical village and town mortality estimated at 10%-40%. [...]
2022 -  10.1016/j.cub.2022.09.023
Current Biology, Vol. 32 (November 2022) , p. 1-9/e1-e6
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1 p, 5.9 MB |
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
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Liu, Shanlin (China Agricultural University. Department of Entomology, College of Plant Protection) ;
Westbury, Michael V. (University of Copenhagen. The GLOBE Institute) ;
Dussex, Nicolas (Centre for Palaeogenetics) ;
Kieren, J. Mitchell (University of Adelaide. School of Biological Sciences) ;
Sinding, Mikkel-Holger S. (University of Copenhagen. The GLOBE Institute) ;
Heintzman, Peter D. (UiT The Arctic University of Norway. The Arctic University Museum of Norway) ;
Duchêne, David A. (University of Copenhagen. The GLOBE Institute) ;
Kapp, Joshua D. (University of California. Department of Ecology and Evolutionary Biology) ;
Von Seth, Joahanna (Centre for Palaeogenetics) ;
Heiniger, Holly (School of Biological Sciences, University of Adelaide) ;
Sánchez-Barreiro, Fátima (University of Copenhagen. The GLOBE Institute) ;
Margaryan, Ashot (University of Copenhagen. The GLOBE Institute) ;
André-Olsen, Remi (Stockholm University. Science for Life Laboratory) ;
De Cahsan, Binia (University of Copenhagen. The GLOBE Institute) ;
Meng, Guanliang (China National Genebank) ;
Yang, Chentao (China National Genebank) ;
Chen, Lei (Center for Ecological and Environmental Sciences) ;
Van der Valk, Tom (Uppsala University. Department of Cell and Molecular Biology) ;
Moodley, Yoshan (University of Venda. Department of Zoology) ;
Rookmaaker, Leendert (Rhino Resource Center) ;
Bruford, Michael W. (Cardiff University. School of Biosciences) ;
Ryder, Oliver A (San Diego Zoo Wildlife Alliance) ;
Steiner, Cynthia (San Diego Zoo Wildlife Alliance) ;
Bruins-van Sonsbeek, Linda G. R. (Rotterdam Zoo) ;
Vartanyan, Sergey (Russian Academy of Sciences) ;
Guo, Chunxue (China National Genebank) ;
Cooper, Alan (South Australian Museum) ;
Kosintsev, Pavel (Russian Academy of Sciences) ;
Kirillova, Irina (Russian Academy of Sciences) ;
Lister, Adrian M. (Natural History Museum) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute) ;
Dunn, Robert R. (University of Copenhagen. The GLOBE Institute) ;
Lorenzen, Eline D. (University of Copenhagen. The GLOBE Institute) ;
Shapiro, Beth (University of California. Department of Ecology and Evolutionary Biology) ;
Zhang, Guojie (China National Genebank) ;
Antoine, Pierre-Olivier (Université Montpellier. Institut des Sciences de l'Évolution) ;
Dalén, Love (Centre for Palaeogenetics) ;
P. Gilbert, M. Thomas (University of Copenhagen. The GLOBE Institute)
Only five species of the once-diverse Rhinocerotidae remain, making the reconstruction of their evolutionary history a challenge to biologists since Darwin. We sequenced genomes from five rhinoceros species (three extinct and two living), which we compared to existing data from the remaining three living species and a range of outgroups. [...]
2021 - 10.1016/j.cell.2021.07.032
Cell, Vol. 184 (September 2021) , p. 1-12
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3.
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8 p, 2.5 MB |
The evolutionary history of extinct and living lions
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de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Barnett, Ross (University of Copenhagen) ;
Sandoval-Velasco, Marcela (University of Copenhagen) ;
Yamaguchi, Nobuyuki (University Malaysia Terengganu) ;
Garrett Vieira, Filipe (University of Copenhagen) ;
Zepeda Mendoza, Marie Lisandra (University of Birmingham) ;
Liu, Shiping (BGI-Shenzhen) ;
Martin, Michael (Norwegian University of Science and Technology) ;
Sinding, Mikkel-Holger S. (University of Copenhagen) ;
Mak, Sarah S. T. (University of Copenhagen) ;
Carøe, Christian (University of Copenhagen) ;
Liu, Shanlin (BGI-Shenzhen) ;
Guo, Chunxue (BGI-Shenzhen) ;
Zheng, Jiao (University of Chinese. Academy of Sciences) ;
Zazula, Grant (Government of Yukon) ;
Baryshnikov, Gennady (Russian Academy of Sciences) ;
Eizirik, Eduardo (Instituto Pró-Carnívoros) ;
Koepfli, Klaus-Peter (Smithsonian Conservation Biology Institute) ;
Johnson, Warren E. (Walter Reed Army Institute of Research) ;
Antunes, Agostinho (University of Porto) ;
Sicheritz-Ponten, Thomas (Asian Institute of Medicine, Science and Technology) ;
Gopalakrishnan, Shyam (University of Copenhagen) ;
Larson, Greger (University of Oxford) ;
Yang, Huanming (James D. Watson Institute of Genome Science) ;
O'Brien, Stephen J. (Nova Southeastern University) ;
Hansen, Anders J. (University of Copenhagen) ;
Zhang, Guojie (Chinese Academy of Sciences) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Gilbert, M. Thomas P. (Norwegian University of Science and Technology)
Lions were once the most globally widespread mammal species, with distinct populations in Africa, Eurasia, and America. We generated a genomic dataset that included 2 extinct Pleistocene cave lions, 12 lions from historically extinct populations in Africa and the Middle East, and 6 modern lions from Africa and India. [...]
2020 - 10.1073/pnas.1919423117
Proceedings of the National Academy of Sciences of the United States of America, Vol. 117, Num. 20 (May 2020) , p. 10927-10934
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