Marco Sola, Santiago - Search Results - UAB Digital Repository of Documents

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Results overview: Found 8 records in 0.02 seconds.
Articles, 1 records found Contributions to meetings and congresses, 2 records found Research literature, 1 records found Course materials, 4 records found

Articles	1 records found

13 p, 995.3 KB

Boosting the FM-index on the GPU : effective techniques to mitigate random memory access / Chacón de San Baldomero, Alejandro (Universitat Autònoma de Barcelona) ; Marco-Sola, Santiago (Centre Nacional d'Anàlisi Genòmica) ; Espinosa Morales, Antonio Miguel (Universitat Autònoma de Barcelona) ; Ribeca, Paolo (The Pirbright Institute) ; Moure López, Juan Carlos (Universitat Autònoma de Barcelona)
The recent advent of high-throughput sequencing machines producing big amounts of short reads has boosted the interest in efficient string searching techniques. As of today, many mainstream sequence alignment software tools rely on a special data structure, called the FM-index, which allows for fast exact searches in large genomic references. [...]
2015 - DOI (Digital Object Identifier)

10.1109/TCBB.2014.2377716
IEEE/ACM Transactions on computational biology and bioinformatics, Vol. 12, No. 5 (Sep.-Oct. 2015)

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Contributions to meetings and congresses	2 records found

9 p, 645.7 KB

FM-index on GPU : a cooperative scheme to reduce memory footprint / Chacón de San Baldomero, Alejandro (Universitat Autònoma de Barcelona) ; Marco-Sola, Santiago (Centre Nacional d'Anàlisi Genòmica)
The FM-index is a data structure which is seeing more and more pervasive use, in particular in the field of highthroughput bioinformatics. Algorithms based on it show a pseudo-random memory access pattern. [...]
2014 - DOI (Digital Object Identifier)

10.1109/ISPA.2014.10
ISPA : IEEE International Symposium on Parallel and Distributed Processing with Applications. Milà, Itàlia, 12è : 2014

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10 p, 646.3 KB

Thread-cooperative, bit-parallel computation of Levenshtein distance on GPU / Chacón de San Baldomero, Alejandro (Universitat Autònoma de Barcelona) ; Marco-Sola, Santiago (Centre Nacional d'Anàlisi Genòmica)
Approximate string matching is a very important problem in computational biology; it requires the fast computation of string distance as one of its essential components. Myers’ bit-parallel algorithm improves the classical dynamic programming approach to Levenshtein distance computation, and offers competitive performance on CPUs. [...]
2014 - DOI (Digital Object Identifier)

10.1145/2597652.2597677
ICS : International Conference on Supercomputing. Munic, Alemanya, : 2014

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Research literature	1 records found

9 p, 1.4 MB

Aceleración de algoritmos de emparejamiento de secuencias genéticas / Gutiérrez Martín, Francisco ; Moure López, Juan Carlos, dir. (Universitat Autònoma de Barcelona. Departament d'Arquitectura de Computadors i Sistemes Operatius) ; Marco Sola, Santiago, dir. (Universitat Autònoma de Barcelona. Departament d'Arquitectura de Computadors i Sistemes Operatius) ; Universitat Autònoma de Barcelona. Escola d'Enginyeria
El emparejamiento de secuencias genéticas se puede definir como la búsqueda de las diferencias que existen entre dos cadenas de caracteres: patrón y texto. Existe una gran variedad de algoritmos que resuelven este problema con diferentes costes computacionales. [...]
The matching of genetic sequences can be defined as the search for the differences between two-character strings: pattern and text. A great variety of algorithms can solve this problem with different computational costs. [...]
L'aparellament de seqüències genètiques es pot definir com la recerca de les diferències que hi ha entre dues cadenes de caràcters: patró i text. Hi ha una gran varietat d'algoritmes que resolen aquest problema amb diferents costos computacionals. [...]
2018-07-11
Enginyeria Informàtica [958]

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Course materials	4 records found

4 p, 79.8 KB

Master's Dissertation [42402] / Barbadilla Prados, Antoni ; Pardo Carrasco, Leonardo ; Ruíz Panadero, Alfredo ; Senar Rosell, Miquel Àngel ; Marechal, Jean-Didier Pierre ; Cordomi Montoya, Arnau ; González Wong, Angel ; Yero Corona, Daniel ; Marco Sola, Santiago ; Cáceres Aguilar, Mario ; Espinosa Morales, Antonio ; Masgrau Fontanet, Laura ; Negre de Bofarull, Barbara ; Conchillo Solé, Oscar ; González Ruíz, Juan Ramón ; Casillas Viladerrams, Sònia ; Egea Sánchez, Raquel ; Daura Ribera, Xavier ; Universitat Autònoma de Barcelona. Facultat de Biociències
1 The Master's Thesis (MT) is an autonomous and individually research work that gives the student the opportunity to focus on some of the topics dealt with in the academic modules of the Master, as well as, to integrate all together the capacities and competences achieved along the Master's degree. [...]
2018-19
Màster Universitari en Bioinformàtica / Bioinformatics [1112]

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6 p, 89.1 KB

Arquitectura de computadors [102775] / Senar Rosell, Miquel Àngel ; Moure Lopez, Juan Carlos ; Marco Sola, Santiago ; Universitat Autònoma de Barcelona. Escola d'Enginyeria
1. Entendre les tècniques arquitectòniques basades en paral·lelisme per millorar el rendiment del computador. 2. Entendre el principi de localitat d'accés a dades i les solucions arquitectòniques aplicades a la jerarquia de memòria. [...]
2018-19
Grau en Enginyeria Informàtica [958]

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