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1.
38 p, 1.7 MB Transposon insertions, structural variations, and SNPs contribute to the evolution of the melon genome / Sanseverino, Walter (Centre de Recerca en Agrigenòmica) ; Hénaff, Elizabeth (Centre de Recerca en Agrigenòmica) ; Vives, Cristina (Centre de Recerca en Agrigenòmica) ; Pinosio, Sara (Universita degli studi di Udine. Dipartimento di szience agrarie e ambientali) ; Burgos-Paz, William (Centre de Recerca en Agrigenòmica) ; Morgante, Michele (Universita degli studi di Udine. Dipartimento di szience agrarie e ambientali) ; Ramos Onsins, Sebastián E. (Centre de Recerca en Agrigenòmica) ; Garcia Mas, Jordi (Centre de Recerca en Agrigenòmica) ; Casacuberta i Suñer, Josep M. (Centre de Recerca en Agrigenòmica)
The availability of extensive databases of crop genome sequences should allow analysis of crop variability at an unprecedented scale, which should have an important impact in plant breeding. However, up to now the analysis of genetic variability at the whole-genome scale has been mainly restricted to single nucleotide polymorphisms (SNPs). [...]
2015 - 10.1093/molbev/msv152
Molecular biology and evolution, Vol. 32, issue 10 (Oct. 2015) , p. 2760-74  
2.
13 p, 1.2 MB Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm / Verde, Ignazio (Centro di Ricerca per la Frutticoltura (Roma)) ; Bassil, Nahla (United States Department of Agriculture. National Clonal Germplasm Repository) ; Scalabrin, Simone (Istituto di Genomica Applicata) ; Gilmore, Barbara (United States Department of Agriculture. National Clonal Germplasm Repository) ; Lawley, Cynthia T. (Illumina Inc. (California)) ; Gasic, Ksenija (Clemson University. School of Agricultural, Forest and Environmental Sciences) ; Micheletti, Diego (Centre de Recerca en Agrigenòmica) ; Rosyara, Umesh R. (Michigan State University. Department of Horticulture) ; Cattonaro, Federica (Istituto di Genomica Applicata) ; Vendramin, Elisa (Centro di Ricerca per la Frutticoltura (Roma)) ; Main, Dorrie (Washington State University. Department of Horticulture & Landscape Architecture) ; Aramini, Valeria (Centro di Ricerca per la Frutticoltura (Roma)) ; Blas, Andrea L. (Centre de Recerca en Agrigenòmica) ; Mockler, Todd C. (The Donald Danforth Plant Science Center) ; Bryant, Douglas W. (The Donald Danforth Plant Science Center) ; Wilhelm, Larry (Oregon Health Sciences University) ; Troggio, Michela (The Istituto Agrario di San Michele all’Adige) ; Sosinski, Bryon (North Carolina State University. Department of Horticultural Science) ; Aranzana Civit, Mª José (Centre de Recerca en Agrigenòmica) ; Arús i Gorina, Pere (Centre de Recerca en Agrigenòmica) ; Iezzoni, Amy (Michigan State University. Department of Horticulture) ; Morgante, Michele (Istituto di Genomica Applicata) ; Peace, Cameron (Washington State University. Department of Horticulture & Landscape Architecture)
Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to enable molecular breeding efforts such as genome wide association studies, fine mapping, genomic selection and marker-assisted selection in peach [Prunus persica (L. [...]
The almost 7,000 SNPs verified as polymorphic through extensive empirical evaluation represent an excellent source of markers for future studies in genetic relatedness, genetic mapping, and dissecting the genetic architecture of complex agricultural traits. [...]

2012 - 10.1371/journal.pone.0035668
Plos One, Vol. 7, issue 4 (April 2012) , e35668  

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