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1.
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12 p, 1.5 MB |
Y-chromosome target enrichment reveals rapid expansion of haplogroup R1b-DF27 in Iberia during the Bronze Age transition
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García-Fernández, Carla (Universitat Pompeu Fabra) ;
Lizano, Esther (Institut Català de Paleontologia Miquel Crusafont) ;
Telford, Marco (Universitat Pompeu Fabra) ;
Olalde, Íñigo (Universidad del País Vasco. Grupo de Investigación BIOMICs) ;
de Cid, Rafael (Institut Germans Trias i Pujol) ;
Larmuseau, Maarten H. D. (University of Antwerp. ARCHES-Antwerp Cultural Heritage Sciences) ;
de Pancorbo, Marian M. (Universidad del País Vasco. Grupo de Investigación BIOMICs) ;
Calafell, Francesc (Universitat Pompeu Fabra)
The Y chromosome can yield a unique perspective into the study of human demographic history. However, due to the repetitive nature of part of its sequence, only a small set of regions are suitable for variant calling and discovery from short-read sequencing data. [...]
2022 -  10.1038/s41598-022-25200-7
Scientific reports, Vol. 12 (December 2022) , art. 20708
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2.
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15 p, 4.3 MB |
Kinship practices in the early state El Argar society from Bronze Age Iberia
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Villalba-Mouco, Vanessa (Instituto Universitario de Investigación en Ciencias Ambientales de Aragón) ;
Oliart Caravatti, Camila (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Rihuete Herrada, Cristina (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Rohrlach, Adam B. (University of Adelaide. School of Mathematical Sciences) ;
Fregeiro, María Inés (Independent researcher, Murcia, Spain) ;
Childebayeva, Ainash (Max Planck Institute for Evolutionary Anthropology. Department of Archaeogenetics) ;
Ringbauer, Harald (Max Planck Institute for Evolutionary Anthropology. Department of Archaeogenetics) ;
Olalde, Iñigo (Harvard Medical School. Department of Genetics) ;
Celdrán Beltrán, Eva (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Puello-Mora, Catherine (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Valério, Miguel (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Krause, Johannes (Max Planck Institute for Evolutionary Anthropology. Department of Archaeogenetics) ;
Lull, Vicente 1949- (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Micó Pérez, Rafael (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Risch, Robert (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Haak, Wolfgang (Max Planck Institute for Evolutionary Anthropology. Department of Archaeogenetics)
The Early Bronze Age in Europe is characterized by social and genetic transformations, starting in the early 3rd millennium BCE. New settlement and funerary structures, artifacts and techniques indicate times of change with increasing economic asymmetries and political hierarchization. [...]
2022 - 10.1038/s41598-022-25975-9
Scientific reports, Vol. 12 (december 2022)
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3.
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19 p, 2.9 MB |
Salmonella enterica from a soldier from the 1652 siege of Barcelona (Spain) supports historical transatlantic epidemic contacts
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de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Carrión, Pablo (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Olalde, Iñigo (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Llovera, Laia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Lizano, Esther (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Pàmies, Dídac (Antequem. Arqueologia Patrimoni Cultural) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Balloux, François (University College London. UCL Genetics Institute) ;
van Dorp, Lucy (University College London. UCL Genetics Institute) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Ancient pathogen genomics is an emerging field allowing reconstruction of past epidemics. The demise of post-contact American populations may, at least in part, have been caused by paratyphoid fever brought by Europeans. [...]
2021 - 10.1016/j.isci.2021.103021
iScience, Vol. 24, Issue 9 (September 2021) , art. 103021
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4.
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22 p, 2.0 MB |
Genomic analysis of 18th-century Kazakh individuals and their oral microbiome
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White, Anna E. (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Carrión, Pablo (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Bonora, Gian Luca (International Association for Mediterranean and East Studies - ISMEO) ;
Llovera, Laia (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Cilli, Elisabetta (University of Bologna. Department of Cultural Heritage) ;
Lizano, Esther (Institut Català de Paleontologia Miquel Crusafont) ;
Khabdulina, Maral K. (L.N. Gumilev Eurasian National University. K.A. Akishev Institute of Archaeology) ;
Tleugabulov, Daniyar T. (L.N. Gumilev Eurasian National University. K.A. Akishev Institute of Archaeology) ;
Olalde, Iñigo (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Marques-Bonet, Tomas 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Balloux, François (University College London. UCL Genetics Institute. Department of Genetics Evolution & Environment) ;
Pettener, Davide (University of Bologna. Department of Biological, Geological and Environmental Sciences) ;
van Dorp, Lucy (University College London. UCL Genetics Institute. Department of Genetics Evolution & Environment) ;
Luiselli, Donata (University of Bologna. Department of Cultural Heritage) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
The Asian Central Steppe, consisting of current-day Kazakhstan and Russia, has acted as a highway for major migrations throughout history. Therefore, describing the genetic composition of past populations in Central Asia holds value to understanding human mobility in this pivotal region. [...]
2021 - 10.3390/biology10121324
Biology, Vol. 10, Issue 12 (December 2021) , art. 1324
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5.
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13 p, 1.5 MB |
Plasmodium vivax Malaria viewed through the lens of an eradicated European strain
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van Dorp, Lucy (University College London. UCL Genetics Institute (UK)) ;
Gelabert Xirinachs, Pere (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Rieux, Adrien (Coopération Internationale en Recherche Agronomique pour le Développement (France)) ;
de Manuel, Marc (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
de-Dios, Toni (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Gopalakrishnan, Shyam (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Carøe, Christian (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Sandoval Velasco, Marcela (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Fregel, Rosa (Universidad de La Laguna. Departamento de Bioquímica, Microbiología, Biología Celular y Genética) ;
Olalde, Iñigo (Harvard Medical School. Department of Genetics (USA)) ;
Escosa, Raúl (Consorci de Polítiques Ambientals de les Terres de l'Ebre) ;
Aranda Pallero, Carles (Consell Comarcal del Baix Llobregat. Servei de Control de Mosquits) ;
Huijben, Silvie (Barcelona Institute for Global Health (ISGlobal)) ;
Mueller, Ivo (Barcelona Institute for Global Health (ISGlobal)) ;
Marques-Bonet, Tomas, 1975- (Institut Català de Paleontologia Miquel Crusafont) ;
Balloux, François (University College London. UCL Genetics Institute (UK)) ;
Gilbert, M. Thomas P. (University of Copenhagen. The GLOBE Institute (Denmark)) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
The protozoan Plasmodium vivax is responsible for 42% of all cases of malaria outside Africa. The parasite is currently largely restricted to tropical and subtropical latitudes in Asia, Oceania, and the Americas. [...]
2020 - 10.1093/molbev/msz264
Molecular biology and evolution, Vol. 37, Issue 3 (March 2020) , p. 773-785
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6.
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14 p, 1.8 MB |
Evolutionary and functional impact of common polymorphic inversions in the human genome
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Giner-Delgado, Carla (Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia) ;
Villatoro, Sergi (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Lerga Jaso, Jon (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Gayà Vidal, Magdalena (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Oliva Pavia, Meritxell (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Castellano Esteve, David (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Pantano, Lorena (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Bitarello, Bárbara D. (Max-Planck-Institut für Evolutionäre Anthropologie) ;
Izquierdo Fontanills, David (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Noguera, Isaac (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Olalde, Iñigo (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Delprat Obeaga, Alejandra (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Blancher, Antoine (Centre de Physiopathologie Toulouse-Purpan) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Esko, Tõnu (Estonian Genome Center) ;
O'Reilly, Paul F. (King's College London. Institute of Psychiatry, Psychology & Neuroscience) ;
Andrés, Aida M. (Max-Planck-Institut für Evolutionäre Anthropologie) ;
Ferretti, Luca (University of Oxford. Big Data Institute) ;
Puig Font, Marta (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí") ;
Cáceres Aguilar, Mario (Universitat Autònoma de Barcelona. Institut de Biotecnologia i de Biomedicina "Vicent Villar Palasí")
Inversions are one type of structural variants linked to phenotypic differences and adaptation in multiple organisms. However, there is still very little information about polymorphic inversions in the human genome due to the difficulty of their detection. [...]
2019 - 10.1038/s41467-019-12173-x
Nature communications, Vol. 10 (2019) , art. 4222
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7.
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10 p, 752.3 KB |
Genome data from a sixteenth century pig illuminate modern breed relationships
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Ramírez, Óscar (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Burgos-Paz, William (Centre de Recerca en Agrigenòmica) ;
Casas Díaz, Encarna (Centre de Recerca en Agrigenòmica) ;
Ballester Devis, Maria (Centre de Recerca en Agrigenòmica) ;
Bianco, Erica (Centre de Recerca en Agrigenòmica) ;
Olalde, Iñigo (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Santpere, G. (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Novella Dalmau, Violeta (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Gut, Marta (Centre Nacional d'Anàlisi Genòmica) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Saña Seguí, Maria (Universitat Autònoma de Barcelona. Departament de Prehistòria) ;
Perez-Enciso, Miguel (Centre de Recerca en Agrigenòmica)
Ancient DNA (aDNA) provides direct evidence of historical events that have modeled the genome of modern individuals. In livestock, resolving the differences between the effects of initial domestication and of subsequent modern breeding is not straight forward without aDNA data. [...]
2014 - 10.1038/hdy.2014.81
Heredity, Vol. 114 (2015) , p. 175-184
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8.
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5 p, 1.2 MB |
Ancient DNA sheds light on the ancestry of pre-hispanic Canarian pigs
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Olalde, Iñigo (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Capote, Juan (Instituto Canario de Investigaciones Agrarias) ;
Arco Aguilar, María del Carmen (Universidad de La Laguna. Departamento de Geografía e Historia) ;
Atoche Peña, Pablo (Universidad de Las Palmas de Gran Canaria. Departamento de Ciencias Históricas) ;
Delgado Darías, Teresa (Museo Canario) ;
González-Anton, Rafael (Museo de la Naturaleza y el Hombre-M Arqueológico) ;
Pais, Jorge (Museo Arqueológico Benahorita) ;
Amills i Eras, Marcel (Centre de Recerca en Agrigenòmica) ;
Lalueza-Fox, Carles (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona)) ;
Ramírez, Óscar (Institut de Biologia Evolutiva (UPF-CSIC) (Barcelona))
Background: Canarian Black (CB) pigs belong to an autochthonous and endangered breed, which is spread throughout the Canarian archipelago. It is commonly accepted that they represent a relic of the pig populations that were bred by the Berbers in North Africa over millennia. [...]
2015 - 10.1186/s12711-015-0115-7
Genetics, selection, evolution, Vol. 47 (2015) , art.40
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